PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285636.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Dof

Protein Properties

Length: 563aa MW: 60488.7 Da PI: 7.2132

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.5	1.5e-38	40	99	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ XP_021285636.1 40 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSK 99 6899****************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MQDIHTIGGG RIFNGGGGGG GGGGGGGGDR RLRPHHHPSH QALKCPRCDS LNTKFCYYNN 60 YNLSQPRHFC KSCRRYWTKG GVLRNVPVGG GCRKAKRSKT KPSPETATAA AAAAAAAPPQ 120 PQQQHCDQRK ANSHSSSESS SLTAANSNVA VTNNNNNNDN DNNNNNSSAG GTAEAVSAVT 180 SHSNLINVSE SKFYGNPNNL GFEPGLLEQG SDCGIFSEIG SFTSLITSSN NETLSFGFST 240 VLNGQGLEQG QWQQQQQQQK MMSVGGEEIS GGLLDQTVQV ELSNLHSRSE GEGSGGFGPL 300 DWQGSGDQGL FDLPNAVDET YWSQSQWTDQ DHPNLYLPQN SIAVWLQNVP RHHETRKTVM 360 IIANGGVVDF DGGKEGKGWG NTMMWRFRWV VVVVVVTGKL GIGGSRACAE VVSQVSPPYG 420 HTSHVSVWVL KSDVILTISQ GPLILSRDFL GSEFAVPHWH IMFAHIKCGF RTLDSRXGVA 480 VGGGGKLGEG FDVVLXGILI FAMLGHXGAE HWSGPFLAET MIEAFMGLDL KFWYKLEGDW 540 GLLHSLNLRG CHSSTWLLGG VRA

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MQDIHTIGGG RIFNGGGGGG GGGGGGGGDR RLRPHHHPSH QALKCPRCDS LNTKFCYYNN  60
YNLSQPRHFC KSCRRYWTKG GVLRNVPVGG GCRKAKRSKT KPSPETATAA AAAAAAAPPQ  120
PQQQHCDQRK ANSHSSSESS SLTAANSNVA VTNNNNNNDN DNNNNNSSAG GTAEAVSAVT  180
SHSNLINVSE SKFYGNPNNL GFEPGLLEQG SDCGIFSEIG SFTSLITSSN NETLSFGFST  240
VLNGQGLEQG QWQQQQQQQK MMSVGGEEIS GGLLDQTVQV ELSNLHSRSE GEGSGGFGPL  300
DWQGSGDQGL FDLPNAVDET YWSQSQWTDQ DHPNLYLPQN SIAVWLQNVP RHHETRKTVM  360
IIANGGVVDF DGGKEGKGWG NTMMWRFRWV VVVVVVTGKL GIGGSRACAE VVSQVSPPYG  420
HTSHVSVWVL KSDVILTISQ GPLILSRDFL GSEFAVPHWH IMFAHIKCGF RTLDSRXGVA  480
VGGGGKLGEG FDVVLXGILI FAMLGHXGAE HWSGPFLAET MIEAFMGLDL KFWYKLEGDW  540
GLLHSLNLRG CHSSTWLLGG VRA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	17	GGGRIFNGGG
2	9	18	GGGRIFNGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-40	Dof family protein