PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021285531.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | ARF | ||||||||
Protein Properties | Length: 856aa MW: 95276.8 Da PI: 6.5432 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70 | 3.2e-22 | 160 | 261 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + ++ XP_021285531.1 160 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 251 99*****************************7333.34459************************************************..3488 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + l+v+v+r+ XP_021285531.1 252 GDLRVGVRRA 261 889****996 PP | |||||||
2 | Auxin_resp | 117.5 | 1.1e-38 | 286 | 368 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha +t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW++SkWr+Lk XP_021285531.1 286 AWHAYTTRTIFTVYYKPRTSPAEFIVPFDQYVESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGTEDCDPKRWQDSKWRCLK 368 79*******************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence |
MTTSEVSIKG NCVNGRGDSF SSGYSEPNDA RNTMEGQNGH STRPAAVRDP ETALYTELWH 60 ACAGPLVTVP REGERVFYFP QGHIEQVEAS TNQVADQQMP VYDLPSKILC RVINVQLKAE 120 PDTDEVFAQV TLLPEPNQDE NTVDKEPPIP PPPRFHVHSF CKTLTASDTS THGGFSVLRR 180 HADECLPPLD MSRQPPTQEL VAKDLHANEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA 240 GDAFIFLRGE NGDLRVGVRR AMRQQSNVPS SVISSHSMHL GVLATAWHAY TTRTIFTVYY 300 KPRTSPAEFI VPFDQYVESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG TEDCDPKRWQ 360 DSKWRCLKVR WDETSTIPRP ERVSPWKIEP ALAPPALNPL PMPRPKRPRS NAVPSSPDSS 420 VLTREGSSKV TVDPSPASGF SRVLQGQEFS TLRGNFAESN ESDTAEKSVI WPPSVDDEKI 480 DVVSASRRFG SENWMSSGRH EPTYSDLLSG FGLNADSSHG YCPPLADQTL AAGNPIRKQL 540 LEQEGKLGSW SLIPSGLSLK LVDNNAKPTV QGSDMPYLAR GNGRFSGFGE YPVLQGHRIE 600 HSHGNWMMPP PTSSHFESPA HSRDLISKTS SVQEHEAGKS REGNCKLFGI PLISNSVSSE 660 PAVSHINVLN KPVGHMQPSS HQVRAFESDQ KFEKSKVSQL PEGLSAFNEQ DKTFHLGQPH 720 TREIQSKPAS VSTRSCTKVH KQGIALGRSV DLTKFNNYEE LIAELDQLFD FGGELMAPRR 780 DWLVVYTDDE GDMMLVGDDP WQEFCAMVRK IGIYSREEVQ KMKPGSLSSK GEDNPVSAEE 840 LDAKEVKCPG FSAENC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | ARF family protein |