PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285529.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 856aa    MW: 95276.8 Da    PI: 6.5432
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3703.2e-22160261199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_021285529.1 160 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 251
                     99*****************************7333.34459************************************************..3488 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+v+v+r+
  XP_021285529.1 252 GDLRVGVRRA 261
                     889****996 PP
2Auxin_resp117.51.1e-38286368183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha +t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW++SkWr+Lk
  XP_021285529.1 286 AWHAYTTRTIFTVYYKPRTSPAEFIVPFDQYVESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGTEDCDPKRWQDSKWRCLK 368
                     79*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    
MTTSEVSIKG NCVNGRGDSF SSGYSEPNDA RNTMEGQNGH STRPAAVRDP ETALYTELWH  60
ACAGPLVTVP REGERVFYFP QGHIEQVEAS TNQVADQQMP VYDLPSKILC RVINVQLKAE  120
PDTDEVFAQV TLLPEPNQDE NTVDKEPPIP PPPRFHVHSF CKTLTASDTS THGGFSVLRR  180
HADECLPPLD MSRQPPTQEL VAKDLHANEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA  240
GDAFIFLRGE NGDLRVGVRR AMRQQSNVPS SVISSHSMHL GVLATAWHAY TTRTIFTVYY  300
KPRTSPAEFI VPFDQYVESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG TEDCDPKRWQ  360
DSKWRCLKVR WDETSTIPRP ERVSPWKIEP ALAPPALNPL PMPRPKRPRS NAVPSSPDSS  420
VLTREGSSKV TVDPSPASGF SRVLQGQEFS TLRGNFAESN ESDTAEKSVI WPPSVDDEKI  480
DVVSASRRFG SENWMSSGRH EPTYSDLLSG FGLNADSSHG YCPPLADQTL AAGNPIRKQL  540
LEQEGKLGSW SLIPSGLSLK LVDNNAKPTV QGSDMPYLAR GNGRFSGFGE YPVLQGHRIE  600
HSHGNWMMPP PTSSHFESPA HSRDLISKTS SVQEHEAGKS REGNCKLFGI PLISNSVSSE  660
PAVSHINVLN KPVGHMQPSS HQVRAFESDQ KFEKSKVSQL PEGLSAFNEQ DKTFHLGQPH  720
TREIQSKPAS VSTRSCTKVH KQGIALGRSV DLTKFNNYEE LIAELDQLFD FGGELMAPRR  780
DWLVVYTDDE GDMMLVGDDP WQEFCAMVRK IGIYSREEVQ KMKPGSLSSK GEDNPVSAEE  840
LDAKEVKCPG FSAENC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein