PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285318.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 570aa    MW: 64054.5 Da    PI: 4.7886
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.61.2e-1382025703374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + L+ecA ++s+g+ e+a+a+++ l++ +s +gdp qR+aay++e+L ar+a+s++ lykal+++e +   ss++laa+++++ev+P++kf++++
  XP_021285318.1 202 QMLIECAAVLSEGNIEEASAIINDLRQKVSIQGDPPQRIAAYMVEGLVARMAESGKYLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFMA 293
                     79*****************************************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI ea++ e+rvHiiDfdisqG Q+++L+q++a+Rp++pp+lR+Tgv++pes+   +  l  +g rL+k+Ae+l+vpfef++ va+r++ ++
  XP_021285318.1 294 ANGAIIEAFKDEKRVHIIDFDISQGSQYITLIQTIAKRPGKPPHLRLTGVDDPESVqrLNGGLAIVGLRLEKLAEALDVPFEFQA-VASRTSLVT 387
                     ******************************************************99777889***********************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++L+++pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+f+sl+a+lpres++r++v
  XP_021285318.1 388 PSMLDCRPGEALIVNFAFQLHHMPDESVSTINQRDQLLRMVKSLNPKLVTVVEQDVNTNTSPFFPRFVEAYSYYSAVFESLDATLPRESQDRMNV 482
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s ++ + ++ l+r++ ++ y+++e+ g+l +gW+d++L+++SaWr
  XP_021285318.1 483 ERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFTSCPMSPNVIDMIRKLIREYCDR-YKLKEDLGALHFGWEDKSLIVASAWR 570
                     ************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    
MYQDSFYNTT IQRVETMSLV RSAEPATAAY RNTKLYSLQG SDSSGLSAQM FGSHKHKPVY  60
ITDSYSSESY EKYFLDSPTE ELIQPSSSGI SGSSFRPKDV SSFQLRDYLE IQSPETLDSD  120
TDKMKLKLQE LERALLADND VDEDDDMFGT GISMEIDGEW SDPIRTESLH DSPKESSSSD  180
SNLSSFSSNK EVSHVSSRSP KQMLIECAAV LSEGNIEEAS AIINDLRQKV SIQGDPPQRI  240
AAYMVEGLVA RMAESGKYLY KALRCKEPPS SDRLAAMQIL FEVCPCFKFG FMAANGAIIE  300
AFKDEKRVHI IDFDISQGSQ YITLIQTIAK RPGKPPHLRL TGVDDPESVQ RLNGGLAIVG  360
LRLEKLAEAL DVPFEFQAVA SRTSLVTPSM LDCRPGEALI VNFAFQLHHM PDESVSTINQ  420
RDQLLRMVKS LNPKLVTVVE QDVNTNTSPF FPRFVEAYSY YSAVFESLDA TLPRESQDRM  480
NVERQCLARD IVNIVACEGE ERIERYEVAG KWRARMMMAG FTSCPMSPNV IDMIRKLIRE  540
YCDRYKLKED LGALHFGWED KSLIVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein