PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285146.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C3H
Protein Properties Length: 365aa    MW: 41044.8 Da    PI: 7.2626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53e-10120142426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       C++f+r+G C++Gd C FaHg
  XP_021285146.1 120 TVCSDFRRGGGCPRGDDCDFAHG 142
                     68********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MSSTCAEQHK LQPSHPQLPF KDIEIPPRKL LLSHNHFQEN ATMQIPFEGS LQKYLPSNRN  60
NAEDEDNDAD PYATDHFRMY EFKVRRCTRS RSHDWTDCPF AHPNEKARRR DPLRFRYSST  120
VCSDFRRGGG CPRGDDCDFA HGVFECWLHP TRYRTEACKD GKNCKRKICF FAHSSRELRL  180
LPDGSPKYKN SGSCSSSPMN KNNHCCLFCH SVTSSPTSTL LGLSHLSRSP SLSPPLSPVK  240
QRASLSGFSP ISRYGDRLSK FGTEMMSYKD ALNELMSSLE TMNFCEVSSP MAGGNNLNEN  300
ISWLDASLNG EDQQQFVLSP SRPSPSESGE YFGATKQIGG YENLNGNGVA CDPDPDLGWV  360
NELLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-61C3H family protein