PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285123.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 335aa    MW: 36353.2 Da    PI: 4.6887
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.5e-16213249135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_021285123.1 213 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 249
                     *******99*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MAAANPQPLQ ARLFEEHTQG TIQIEDDDGE YEDDAMDDVE DANVNSVNVA EHGIGVVGGV  60
SGGGGGAGGG VVMASRTSEL TLSFEGEVYV FPAVTPEKVQ AVLLLLGGRD IPTGVPTIEV  120
PFDQNNRGVG DLPKRSNLSR RIASLVRFRE KRKERCFDKK IRYTVRKEVA QRMHRKNGQF  180
ASLKESTSAS SWDSSQTGVQ DGTPHPETVV RRCQHCGVSE NNTPAMRRGP AGPRTLCNAC  240
GLMWANKGTL RDLSKGGRNI SMDQTEPETP IDVKPSIMEG DFPGNQDEHF MQGNPSKDVT  300
DGSNNASINP DEEVDIYLHI EATDQDSAEQ SSELK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-69GATA family protein