PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284924.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 488aa    MW: 53914.8 Da    PI: 5.4212
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.92.2e-1041024821374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevs 88 
                     lv+lL+++Aea++  +++  la+ +L rl+el+ p++ ++m+RlaayfteAL+  l +s+ +  k l p+  + ++    ++++laa++l++++s
  XP_021284924.1 102 LVHLLMAAAEALTGXNKSgeLARVILVRLKELVXPNDgTNMERLAAYFTEALQGLLEGSGGGHGKHLIPNGPHYHRdehhQADVLAAFQLLQDMS 196
                     68***********9888777************666554********************988777777443332222245599************* PP

            GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                     P++kf+h+taNqaIleav++++r+Hi+D+di++G+QW++L+qaL sR+egpp  +lRiT+++++ sg  s  +++etg+rL  fA+++g pf+f+
  XP_021284924.1 197 PYVKFGHFTANQAILEAVAHDRRIHIVDYDIMEGIQWASLMQALVSRKEGPPapHLRITALSRSGSGrrSIGTIQETGRRLVAFAASIGQPFSFH 291
                     ************************************************886656*********888899999*********************** PP

            GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdslea 273
                         ++ e++++++ ++ +gEal++n++l+l ++  +  ++     ++L   k+l+P++v++ve+e+   +++ F+ rf++ l++ysa++dslea
  XP_021284924.1 292 QCRLDSDETFRPSAVKLVRGEALVINCMLHLPHFSYRAPDSV---ASFLTGAKTLNPRLVTLVEEEVGPiGDGGFVGRFMDLLHHYSAVYDSLEA 383
                     *9999****************************985555555...59*******************9988************************* PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367
                     ++p + ++r+ vEr++lg++i   ++   + r    e+   W+e+l ++GFkpv++s  + +qaklll  ++ dgy+vee  ++ lvlgWk+r+L
  XP_021284924.1 384 GFPMQGRARALVERVFLGPRIAGSLTRIYRTR--GDEESCPWSEWLAAVGFKPVNISFANHCQAKLLLGLFN-DGYSVEELaNNRLVLGWKSRRL 475
                     **************************999884..556679********************************.******97588999******** PP

            GRAS 368 vsvSaWr 374
                     +s+S W+
  XP_021284924.1 476 LSASIWT 482
                     ******6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    
MAMAIDNAFE VDFSSYSTTT TTTTTTDDDL ACTXNDWGSP VVDWDSLSSE RDEFQDLIES  60
MMDDGTGIEL ARVDHETSNS VSXDTMVADK ESNREDFKGL RLVHLLMAAA EALTGXNKSG  120
ELARVILVRL KELVXPNDGT NMERLAAYFT EALQGLLEGS GGGHGKHLIP NGPHYHRDEH  180
HQADVLAAFQ LLQDMSPYVK FGHFTANQAI LEAVAHDRRI HIVDYDIMEG IQWASLMQAL  240
VSRKEGPPAP HLRITALSRS GSGRRSIGTI QETGRRLVAF AASIGQPFSF HQCRLDSDET  300
FRPSAVKLVR GEALVINCML HLPHFSYRAP DSVASFLTGA KTLNPRLVTL VEEEVGPIGD  360
GGFVGRFMDL LHHYSAVYDS LEAGFPMQGR ARALVERVFL GPRIAGSLTR IYRTRGDEES  420
CPWSEWLAAV GFKPVNISFA NHCQAKLLLG LFNDGYSVEE LANNRLVLGW KSRRLLSASI  480
WTSPDSDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-171GRAS family protein