PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284859.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 145aa    MW: 15981.4 Da    PI: 9.6405
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601231.6e-3851041100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC++dCv++pyfp+++ ++fa +hk++Gasnv kll++lp ++r +a++sl++eA++r++ PvyG+vg+++++qqq++ ++++la
  XP_021284859.1   5 RCAACKYLRRKCPSDCVFSPYFPSNNLQRFASIHKIYGASNVAKLLQQLPVHHRAQAVDSLFFEAHCRIEAPVYGCVGLVFTVQQQIHDAATQLA 99 
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                     +++++
  XP_021284859.1 100 KTRAK 104
                     99876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MNPGRCAACK YLRRKCPSDC VFSPYFPSNN LQRFASIHKI YGASNVAKLL QQLPVHHRAQ  60
AVDSLFFEAH CRIEAPVYGC VGLVFTVQQQ IHDAATQLAK TRAKVAVLKS TAHHSQIQSD  120
SNVFLPGPQS VAHLGLFNQA SFGFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-52LBD family protein