PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021284859.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | LBD | ||||||||
Protein Properties | Length: 145aa MW: 15981.4 Da PI: 9.6405 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123 | 1.6e-38 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv++pyfp+++ ++fa +hk++Gasnv kll++lp ++r +a++sl++eA++r++ PvyG+vg+++++qqq++ ++++la XP_021284859.1 5 RCAACKYLRRKCPSDCVFSPYFPSNNLQRFASIHKIYGASNVAKLLQQLPVHHRAQAVDSLFFEAHCRIEAPVYGCVGLVFTVQQQIHDAATQLA 99 6********************************************************************************************** PP DUF260 96 llkee 100 +++++ XP_021284859.1 100 KTRAK 104 99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence |
MNPGRCAACK YLRRKCPSDC VFSPYFPSNN LQRFASIHKI YGASNVAKLL QQLPVHHRAQ 60 AVDSLFFEAH CRIEAPVYGC VGLVFTVQQQ IHDAATQLAK TRAKVAVLKS TAHHSQIQSD 120 SNVFLPGPQS VAHLGLFNQA SFGFI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-52 | LBD family protein |