PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284718.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family BBR-BPC
Protein Properties Length: 336aa    MW: 37203.1 Da    PI: 9.9635
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind391.81e-11913361301
       GAGA_bind   1 mdddgsre..rnkg.yyepa...aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 
                     mdd+g+re  r k+ +y+ a     +++   +q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern a+verdn++++l+++en
  XP_021284718.1   1 MDDSGHREngRLKTdQYRTAqgqWLMHQPSMKQVMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDAAIAERNSAIVERDNAIANLQYREN 95 
                     99999999899999899955443345556667*************************************************************** PP

       GAGA_bind  90 sla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkk 177
                     sla     ++p+g+q+++g+k++++ qq +++ p++++ +++ re++ +++lp +  ++ea ++k+ k++++ak+  ++k+  k+ kk + ++++
  XP_021284718.1  96 SLAtgnmPSCPPGCQISRGVKHVQHPQQnVHHlPHINEAPYNSREMHSSDTLPFTPGTSEAAKSKQGKRGKEAKVIASSKKApKPPKKVKRENED 190
                     *99998889*******************76779********************888777777777777666666544433333444433334444 PP

       GAGA_bind 178 vkkesader..........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPv 246
                      +k                                +k+++k +dl+ln+v +D+st+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+
  XP_021284718.1 191 LNKI----MfgkshewkggqdvggggddlnkqlvaTKSDWKGQDLGLNQVVFDDSTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPA 281
                     3333....0333467899***************************************************************************** PP

       GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     ++++r++Ri+grKmS++af+klL++LaaeG+dlsn vDLkdhWAkHGtn+++ti+
  XP_021284718.1 282 VPNKRHTRIGGRKMSGSAFNKLLSRLAAEGHDLSNSVDLKDHWAKHGTNRYITIK 336
                     ******************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MDDSGHRENG RLKTDQYRTA QGQWLMHQPS MKQVMAIMAE RDAAIQERNL ALSEKKAAIA  60
ERDMAFLQRD AAIAERNSAI VERDNAIANL QYRENSLATG NMPSCPPGCQ ISRGVKHVQH  120
PQQNVHHLPH INEAPYNSRE MHSSDTLPFT PGTSEAAKSK QGKRGKEAKV IASSKKAPKP  180
PKKVKRENED LNKIMFGKSH EWKGGQDVGG GGDDLNKQLV ATKSDWKGQD LGLNQVVFDD  240
STMPPPVCSC TGVLRQCYKW GNGGWQSSCC TTTLSMYPLP AVPNKRHTRI GGRKMSGSAF  300
NKLLSRLAAE GHDLSNSVDL KDHWAKHGTN RYITIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175183KKAPKPPKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-152BBR-BPC family protein