PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021284652.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 19215.8 Da PI: 6.78 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.9 | 6.2e-37 | 29 | 124 | 5 | 100 |
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++lrr+C++dC+++pyfp+++p++f +h+++Gasnv kll++lp++ r +a++sl++eA++r++dPvyG+vg+i+ lqqql++++++la++++ XP_021284652.1 29 IRYLRRRCPPDCIFSPYFPSNNPQRFVSIHRIYGASNVAKLLQQLPTHLRAEAADSLYFEAQCRVEDPVYGCVGLIFLLQQQLHNAESQLAKTQA 123 689*****************************************************************************************998 PP DUF260 100 e 100 e XP_021284652.1 124 E 124 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MKVRIHEAGE GAVHSLYSVL LVSQALISIR YLRRRCPPDC IFSPYFPSNN PQRFVSIHRI 60 YGASNVAKLL QQLPTHLRAE AADSLYFEAQ CRVEDPVYGC VGLIFLLQQQ LHNAESQLAK 120 TQAEIAVLKS QAQHPQTQQV EAEPEFNNFL QQQLDNAADL NFSNQGSSGF M |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 8e-52 | LBD family protein |