PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284618.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 795aa    MW: 87140.9 Da    PI: 6.2319
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.98.1e-1004347943374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL+++Ae v +g++  aq +Larl+++ sp g+p+qR+a+yf+eAL+  +    ++ ++  + ++ ++ +++ ++ a+k+fsevsP+++f ++t
  XP_021284618.1 434 DLLYKAAELVGTGNFLHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLVIM--NNSVSPPHLRSPTPFDVIFKMGAYKVFSEVSPLIQFVNFT 526
                     79***********************************************9997..5555566666667778************************ PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..e 190
                     +Nqa+lea++ ++r+Hi+Dfdi+ G+QW++++q+L  R++g+pslRiT+++sp++++  el  ++e L +fA+e+gv+fe +vl  + l++   +
  XP_021284618.1 527 CNQALLEALDDADRIHIVDFDIGFGAQWASFMQELPMRSRGSPSLRITAFASPSTHHPIELGFMREILMQFANEIGVSFELEVLNFDCLDQSpyS 621
                     ***********************************************************************************966655554446 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     l ++r +++Ea+aVn+ +   +  +++ +l++    +L++vk+lsPk+vv +++ +d+n+ +F +++++a++ y  lf+sl+a    +s++ +k+
  XP_021284618.1 622 LPMFRSNENEAVAVNFPV--WSSSNQPSALPN----LLRFVKQLSPKLVVSSDRGCDRNDLPFPQHIIHAFQSYINLFESLDAV-NVTSDAVNKI 709
                     77888889********99..444455666666....*********************************************665.579******* PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er+l  ++i++ v  +  +     e++  Wr  +++aGF+pv++s++a++qa++++++ +++g+rve++++slvl+W +  L+svSaWr
  XP_021284618.1 710 ERFLCVPRIESTVLGRLHA----PEKMPLWRTLFSSAGFSPVTFSNFAETQAECVVKRAQVRGFRVEKRQASLVLCWLQGDLISVSAWR 794
                     *************998887....9****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    
MHFQLQAKGA VELAGFASIC QQDKWIKQQE ANSFSFANSF YYNNEQEPTS VLHMRRSQSP  60
PTSASLXSSS LNGGAAGAGG GGNSTDNTTT TAATIAPPET SLPNNNKXEW ATELQPITSE  120
LDLVPGPGGG QRCNLGLEDW ENMLSESAVS PSQDRSLLRW ITGDVDDHSF GLKQLLQSGS  180
TGPNPGLDFE GNAGLGVVDQ GPGFDPIGSL DSSGPGNVIS SAAPNLGGFP GSGFLPNTGN  240
NGNGKIGSVM PSSSSVGVVN NHKVLGTSVG LNNNIQNPVF TSPANNIGLP VSLPMLYQQQ  300
QQGQYIESQE EKPQILNAQV LMGQQQHPQN PNFCLPLPQE HHLLQPLPKR LNPGNLEFSS  360
QIPKLQFSDA GHELFMRKQQ QQHMGFPHGV QFVPQQKPLM VAKQKVLGPG EEMAQQQQQH  420
QYQLHQQQQA TLFDLLYKAA ELVGTGNFLH AQGILARLNH QLSPVGKPLQ RAAFYFKEAL  480
QLLVIMNNSV SPPHLRSPTP FDVIFKMGAY KVFSEVSPLI QFVNFTCNQA LLEALDDADR  540
IHIVDFDIGF GAQWASFMQE LPMRSRGSPS LRITAFASPS THHPIELGFM REILMQFANE  600
IGVSFELEVL NFDCLDQSPY SLPMFRSNEN EAVAVNFPVW SSSNQPSALP NLLRFVKQLS  660
PKLVVSSDRG CDRNDLPFPQ HIIHAFQSYI NLFESLDAVN VTSDAVNKIE RFLCVPRIES  720
TVLGRLHAPE KMPLWRTLFS SAGFSPVTFS NFAETQAECV VKRAQVRGFR VEKRQASLVL  780
CWLQGDLISV SAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-120GRAS family protein