PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284607.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

E2F/DP

Protein Properties

Length: 425aa MW: 47683.3 Da PI: 5.1426

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284607.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	83.9	1.3e-26	151	216	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l+ ++++g+++ln a+ L +v ++RRiYDi+NVLe+++liek++kn+irwkg XP_021284607.1 151 RYDSSLGLLTKKFVNLIMEAKDGTLDLNRTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 216 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MGNSSEDPSR SYHPSQFQFQ LLHSHSQSLS IESNQNQNQP LSYGKRMFLA SLGRPPLLFS 60 SFDQTNARLD HVPSAFPTPP TKERESDEAQ TSGRSDVPGH GKVVNRPLLE PERTKGGKQN 120 SKAKAKKNAK SGTQKQNADS PNGLNAAGNC RYDSSLGLLT KKFVNLIMEA KDGTLDLNRT 180 AEVLEVQKRR IYDITNVLEG IGLIEKTSKN HIRWKGSDDM GSKVLDDQVT RLKAEMQSLY 240 AEEQKLDEYI REKQESLRSL DEDANYQKYL FLTEEDIMSL PCFQNQTVFA IKAPENTYIE 300 VPDPDEEIGF PQKPIQRQYK MIIRSHMGPI DLYLLSKYEG QVEDTTVKQA KSVDASSSYG 360 LLCGVECPEL SSEEKASHNN SSKTVNLVCP EAYGIQKLIP TVSEADDDYW FLSDPGVSIT 420 DLWDT

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MGNSSEDPSR SYHPSQFQFQ LLHSHSQSLS IESNQNQNQP LSYGKRMFLA SLGRPPLLFS  60
SFDQTNARLD HVPSAFPTPP TKERESDEAQ TSGRSDVPGH GKVVNRPLLE PERTKGGKQN  120
SKAKAKKNAK SGTQKQNADS PNGLNAAGNC RYDSSLGLLT KKFVNLIMEA KDGTLDLNRT  180
AEVLEVQKRR IYDITNVLEG IGLIEKTSKN HIRWKGSDDM GSKVLDDQVT RLKAEMQSLY  240
AEEQKLDEYI REKQESLRSL DEDANYQKYL FLTEEDIMSL PCFQNQTVFA IKAPENTYIE  300
VPDPDEEIGF PQKPIQRQYK MIIRSHMGPI DLYLLSKYEG QVEDTTVKQA KSVDASSSYG  360
LLCGVECPEL SSEEKASHNN SSKTVNLVCP EAYGIQKLIP TVSEADDDYW FLSDPGVSIT  420
DLWDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47870.1	1e-103	E2F/DP family protein