PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284581.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 441aa MW: 48880.9 Da PI: 9.9344

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.1e-05	208	230	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +nL+ H+ H XP_021284581.1 208 SCPECGEIFMKAENLELHQAIrH 230 8******************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MAGPTHQRKP TKETHQKKRP QKNDKPPSWA VVKGLFFGKH PQPQQEQQQQ LQLQQKQHQQ 60 QQKQVQQQQQ QKQQQKKKQK EQQPEQVMEE TGKKCKKMRC SGSLCSNTKV MHRPETASPE 120 VHKKRASLGS SNNDASSRSM KAPLHELNGV VSSTNSSLSV SSASASSAGG SFRGMPFRRF 180 SGCYECRMVV DPVLGIARDP SLRGSICSCP ECGEIFMKAE NLELHQAIRH AVSELGPEDT 240 SKNIVEIIFQ SSWLKKQTPI CQIDRILKVH NTSKTISKFE EYRDSIKSKA TKLPKKHPRC 300 IADGNELLRF HCTTFACSLG LDGSSNLCTS IPNCNVCSII KNGFKVAQEL SGGSNRKGIL 360 TTATSGKAHD MAAGVEEIGN DKRAMLVCRV IAGRVKKSME GSMEDYDSVA GAVGVYSNLD 420 ELYVFNPKAI LPCFVVIYRG F

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MAGPTHQRKP TKETHQKKRP QKNDKPPSWA VVKGLFFGKH PQPQQEQQQQ LQLQQKQHQQ  60
QQKQVQQQQQ QKQQQKKKQK EQQPEQVMEE TGKKCKKMRC SGSLCSNTKV MHRPETASPE  120
VHKKRASLGS SNNDASSRSM KAPLHELNGV VSSTNSSLSV SSASASSAGG SFRGMPFRRF  180
SGCYECRMVV DPVLGIARDP SLRGSICSCP ECGEIFMKAE NLELHQAIRH AVSELGPEDT  240
SKNIVEIIFQ SSWLKKQTPI CQIDRILKVH NTSKTISKFE EYRDSIKSKA TKLPKKHPRC  300
IADGNELLRF HCTTFACSLG LDGSSNLCTS IPNCNVCSII KNGFKVAQEL SGGSNRKGIL  360
TTATSGKAHD MAAGVEEIGN DKRAMLVCRV IAGRVKKSME GSMEDYDSVA GAVGVYSNLD  420
ELYVFNPKAI LPCFVVIYRG F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-102	C2H2 family protein