PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284333.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 628aa    MW: 68045.8 Da    PI: 6.2893
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.13.2e-1102606282374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++++e+A a+s+g++  ++++L+rl + a+++g++ qRl  +++ AL++r+++       a +p + +e  s+e++aa++l++++sP++k+++l
  XP_021284333.1 260 KQTIMEAASAISEGKTDVVNEILTRLAQVANSKGNSEQRLMECMLLALKSRVNS-------AENPPPVAELFSKEHAAATQLLYDLSPCFKLGFL 347
                     5789*************************************************9.......334444444569********************** PP

            GRAS  97 taNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +aN aIl+a+  +   +++H+iDfdi+qG+Q+++Ll+aL++R +g+p +++iT++++++    e+l+ +g++L+++Ae++gv ++fnv+++ +l+
  XP_021284333.1 348 AANLAILDATLDQsnaNKLHVIDFDIGQGGQYINLLHALSDRGSGQPvMVKITAIADNA--GDERLKMVGDKLSQIAERFGVCLKFNVVASLKLS 440
                     *********976667799*************************888879********55..99*************************8888*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     dl+ e+L ++p+E laVn++++l+r++desvs++++rde+L+ vk+l P+vv++veqe+++n+++F  r+ ea+ yy al ds+e++++r++ er
  XP_021284333.1 441 DLSRESLGCEPDEPLAVNFAFKLYRMPDESVSVDNPRDELLRRVKGLAPRVVTLVEQEMNTNTAPFTSRVGEACGYYGALIDSIESTVSRDKAER 535
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +k+E+  l r+i n vaceg++r+er+e ++kWr+r+++aGF+  pls+++a++ ++ l+  +  + g++v+ee+g + +gW++r+L+++SaWr
  XP_021284333.1 536 VKLEEG-LLRKIANKVACEGRDRVERCEVFGKWRARMSMAGFELKPLSQSVAESLRARLNSGNrvNPGFTVKEENGGVSFGWMGRTLTVASAWR 628
                     ******.889**********************************************99998777789**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    
MASGFSGGGP DFYGGIAGRS MANTGTMSNN QPTAPYRTQI PGIFMDPTSQ IVNRAAPNFI  60
GKRTLADFQT QQHQNNHPGL NSLYLRSVKP RTYQHTSPIS PLSPIDFSTN LSPDVTSNFS  120
SPSSCMSQRY GVPLLQQLRP QQLPLGTTPG TAIQVVNPGL SGVPYMNPAQ TRVVQQQDPE  180
KKMMNQLQEL EKQLLDDDND DEGDAVSVIT NTNSEWSETI QNLISSSGPN NPIAPSPTSS  240
TTSSSSSTSS VASPASTCSK QTIMEAASAI SEGKTDVVNE ILTRLAQVAN SKGNSEQRLM  300
ECMLLALKSR VNSAENPPPV AELFSKEHAA ATQLLYDLSP CFKLGFLAAN LAILDATLDQ  360
SNANKLHVID FDIGQGGQYI NLLHALSDRG SGQPVMVKIT AIADNAGDER LKMVGDKLSQ  420
IAERFGVCLK FNVVASLKLS DLSRESLGCE PDEPLAVNFA FKLYRMPDES VSVDNPRDEL  480
LRRVKGLAPR VVTLVEQEMN TNTAPFTSRV GEACGYYGAL IDSIESTVSR DKAERVKLEE  540
GLLRKIANKV ACEGRDRVER CEVFGKWRAR MSMAGFELKP LSQSVAESLR ARLNSGNRVN  600
PGFTVKEENG GVSFGWMGRT LTVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0GRAS family protein