PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284312.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 413aa MW: 45189.2 Da PI: 9.6896

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	172	194	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H XP_021284312.1 172 ACSQCGEVFPKIESLELHQAVrH 194 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MALLTFLPEQ AAEPKKQLST KRRRKQKKPK QPSSWDQIKN LLTCKQVEGS KVHDPSKNNP 60 PHHHGYSKLG SSCNSICSFR DVVHGNTRVV HRADNSPESS TVGQETGLLR RKAANGSSTR 120 SLSGSTRSNT STTYTTSSSS RAMQFRKLSG CYECHMIVDP SRYPSSRTTI CACSQCGEVF 180 PKIESLELHQ AVRHAVSELG PEDSGRNIVE IIFKSSWLKK DNPICKIERI LKVHNTQRTI 240 QRFEDCRDAV KTRALNSTRK NPRCAADGNE LLRFHCTTST CSLGARGSSS LCGAVPGCGV 300 CTIIRQGFQN KGGSAAVADF KGVRTTASSG RAHDSLDCKD GRRAMLVCRV IAGRVKRVTD 360 DAPLEEDNSS VSAGSYDSLA AYAGVYSNLE ELVVFNPRAI LPCFVVIYKA LES

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MALLTFLPEQ AAEPKKQLST KRRRKQKKPK QPSSWDQIKN LLTCKQVEGS KVHDPSKNNP  60
PHHHGYSKLG SSCNSICSFR DVVHGNTRVV HRADNSPESS TVGQETGLLR RKAANGSSTR  120
SLSGSTRSNT STTYTTSSSS RAMQFRKLSG CYECHMIVDP SRYPSSRTTI CACSQCGEVF  180
PKIESLELHQ AVRHAVSELG PEDSGRNIVE IIFKSSWLKK DNPICKIERI LKVHNTQRTI  240
QRFEDCRDAV KTRALNSTRK NPRCAADGNE LLRFHCTTST CSLGARGSSS LCGAVPGCGV  300
CTIIRQGFQN KGGSAAVADF KGVRTTASSG RAHDSLDCKD GRRAMLVCRV IAGRVKRVTD  360
DAPLEEDNSS VSAGSYDSLA AYAGVYSNLE ELVVFNPRAI LPCFVVIYKA LES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	0.0	C2H2 family protein