PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284090.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 745aa MW: 84472.3 Da PI: 7.5977

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.4	7.8e-31	63	150	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r++ ++ +++r+r+ tr+gCka+++vkk+++gkw v+kl++eHnHel+p XP_021284090.1 63 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRDAGQN--SSKRQRTITRVGCKAQITVKKQTSGKWAVSKLVKEHNHELVP 150 9***************************************9998..9999**********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MDIHPPNLAI EFDDDTTALD LEHPLPFDHY DPALAQPLST LGDPNLEPYE GMEFDSEQAA 60 RIFYNSYARR IGFSTRVSVY QRSRRDGSII CRQIVCSREG FRRDAGQNSS KRQRTITRVG 120 CKAQITVKKQ TSGKWAVSKL VKEHNHELVP PDKVHCLRSH RHVSGPARSL IDTLQAAGMG 180 PSGVMSVLIK ESGGVNNVGF TKVDCQNYMS SSRQRTLGSG GQVVFDYLKQ MQTEDPAFFY 240 AVQGDFGNST GNIFWADAHS RMNYNHFGDT VTFDTTYRTN RYRVPFAPFT GWNHHGQPVL 300 FGCALLLNES ESSFVWLFQT WLAAMSGHHP ISITTDQDRI IRAAVAQVFP GTRHRFCKWN 360 VFREAQEKLS DVYHSHPTFE AEFQRCINVT ETVDEFESCW ESLLLRYSLG DNEWLQSMYN 420 TRQHWVPVYL RDTFFGEMSI NQGSDSINSY FDGYINASTN AQVLIKQYEK AVASRYEKEV 480 KADYDTLNIA PALKTPSPME KQAANLYTRK IFMKFQDELV ETLAYPATAI DDSGLEVMYR 540 VAKFGEDHQA HFVKFNVFGK KASCSCQMFE FSGIICKHVL AVFRVTNVLS LPSHYILKRW 600 TRNAKSGVAV DGCTVELPSN TQESYAARYD NLCHEAIKFV REGTGSIHTF NVAMDALHEA 660 AKKVASAKKN DSAVIKNSPF NSGQQLQSGF ENQEKKIQEL SVELEDASRR CESYRAKLAA 720 VLKDMEEQKL KMSVKVQNVR LILKD

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MDIHPPNLAI EFDDDTTALD LEHPLPFDHY DPALAQPLST LGDPNLEPYE GMEFDSEQAA  60
RIFYNSYARR IGFSTRVSVY QRSRRDGSII CRQIVCSREG FRRDAGQNSS KRQRTITRVG  120
CKAQITVKKQ TSGKWAVSKL VKEHNHELVP PDKVHCLRSH RHVSGPARSL IDTLQAAGMG  180
PSGVMSVLIK ESGGVNNVGF TKVDCQNYMS SSRQRTLGSG GQVVFDYLKQ MQTEDPAFFY  240
AVQGDFGNST GNIFWADAHS RMNYNHFGDT VTFDTTYRTN RYRVPFAPFT GWNHHGQPVL  300
FGCALLLNES ESSFVWLFQT WLAAMSGHHP ISITTDQDRI IRAAVAQVFP GTRHRFCKWN  360
VFREAQEKLS DVYHSHPTFE AEFQRCINVT ETVDEFESCW ESLLLRYSLG DNEWLQSMYN  420
TRQHWVPVYL RDTFFGEMSI NQGSDSINSY FDGYINASTN AQVLIKQYEK AVASRYEKEV  480
KADYDTLNIA PALKTPSPME KQAANLYTRK IFMKFQDELV ETLAYPATAI DDSGLEVMYR  540
VAKFGEDHQA HFVKFNVFGK KASCSCQMFE FSGIICKHVL AVFRVTNVLS LPSHYILKRW  600
TRNAKSGVAV DGCTVELPSN TQESYAARYD NLCHEAIKFV REGTGSIHTF NVAMDALHEA  660
AKKVASAKKN DSAVIKNSPF NSGQQLQSGF ENQEKKIQEL SVELEDASRR CESYRAKLAA  720
VLKDMEEQKL KMSVKVQNVR LILKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein