PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283771.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CAMTA

Protein Properties

Length: 761aa MW: 85348.2 Da PI: 5.098

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	185.8	4.5e-58	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 l+ ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqr XP_021283771.1 20 LEAQHRWLRPAEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQR 114 5679***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Le+el +iv+vhylevk XP_021283771.1 115 RSYWMLEQELMHIVFVHYLEVK 136 *****************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence
MADRASYSLA PRLDIEQILL EAQHRWLRPA EICEILRNYQ KFHIASEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE NFQRRSYWML 120 EQELMHIVFV HYLEVKGSRT IGGIRETTDV SNSQTSSPST SSYSVSHTKA PSGNTDSASP 180 TSTLTSLCED ADSEDSHQAS SRFPTSPQIG NATMMDKMDP GFLNPYSSHP LPGLNCDHEG 240 RSSIPGANEV SHLHGDRPMG IDYGTCMTEA QKTLDLASWE GGLEQYMPVY PVASSHASMA 300 SAQPDTMSIS QQQVMKGKLL AVESADKEFG NLLPAQSNWQ IPLADNALEL PKWPMDQSSN 360 FELAYDTRLF EQKTDDFHLP NALEEFTNND VLNEQPVLKN LQTQLINADT NSFMKSYPEN 420 DMHLEGNINY AFSLKKSLLD GEESLKKVDS FSRWITKELG EVDDLQMQSS SGIAWSTVEC 480 GNVSDDASLS PSISQDQLFS IVDFSPKWAY TDLETEVLII GTFLKSQEEV AKYSWSCMFG 540 EVEVPAEVIA DGILFCHAPP HSVGQVPFYV TCSNRLACSE VREFDYRAGF AKGIHVSHIY 600 GVASTEMLLR FQMLLSLKSL SSLNHHLEGV GEKRDLMAKI ILMKEEEECH QIVDPSSDKD 660 LPQREEKDWL LQKLMKEKLY SWLLHKIVED GKGPNILDEK GQGVLHLAAA LGYDWAVKPT 720 VTAGVSINFR DVNGWTALHW AAFCGRQGPL YLILLICVTP A

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence

MADRASYSLA PRLDIEQILL EAQHRWLRPA EICEILRNYQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE NFQRRSYWML  120
EQELMHIVFV HYLEVKGSRT IGGIRETTDV SNSQTSSPST SSYSVSHTKA PSGNTDSASP  180
TSTLTSLCED ADSEDSHQAS SRFPTSPQIG NATMMDKMDP GFLNPYSSHP LPGLNCDHEG  240
RSSIPGANEV SHLHGDRPMG IDYGTCMTEA QKTLDLASWE GGLEQYMPVY PVASSHASMA  300
SAQPDTMSIS QQQVMKGKLL AVESADKEFG NLLPAQSNWQ IPLADNALEL PKWPMDQSSN  360
FELAYDTRLF EQKTDDFHLP NALEEFTNND VLNEQPVLKN LQTQLINADT NSFMKSYPEN  420
DMHLEGNINY AFSLKKSLLD GEESLKKVDS FSRWITKELG EVDDLQMQSS SGIAWSTVEC  480
GNVSDDASLS PSISQDQLFS IVDFSPKWAY TDLETEVLII GTFLKSQEEV AKYSWSCMFG  540
EVEVPAEVIA DGILFCHAPP HSVGQVPFYV TCSNRLACSE VREFDYRAGF AKGIHVSHIY  600
GVASTEMLLR FQMLLSLKSL SSLNHHLEGV GEKRDLMAKI ILMKEEEECH QIVDPSSDKD  660
LPQREEKDWL LQKLMKEKLY SWLLHKIVED GKGPNILDEK GQGVLHLAAA LGYDWAVKPT  720
VTAGVSINFR DVNGWTALHW AAFCGRQGPL YLILLICVTP A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	CAMTA family protein