PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283617.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 1079aa MW: 119966 Da PI: 8.4625

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.9	4.4e-41	150	227	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_021283617.1 150 MCQVDNCKEDLSNAKDYHRRHKVCEVHSKATKALVGKHMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 227 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1079 aa Download sequence
MEEVGAQLAP PIFMHQALAN RFCEPPSLPR KRDLSYQTPG FQYPNPSQQH VANPRDWNPK 60 QWEWDAVRFI AKPMDTEILQ PGTATAEQRK KERVNGNGNS ITSKKTTAVN EDDDSLQLNL 120 GGRLNSVEEP VSRPNKKVRS GSPGSTNYPM CQVDNCKEDL SNAKDYHRRH KVCEVHSKAT 180 KALVGKHMQR FCQQCSRFHL LSEFDEGKRS CRRRLAGHNR RRRKTQPEDV TSRLLLPVNR 240 DNAGNGNLDI VNLLTALARS QGKNEDKNIN CSSLPNRDQL VQILNKINSL PLPMDLAAKL 300 PNVGVLNRKN QEQPLLGHQN QLNGKNTSSP STMDLLAALS ATLTSSSKDA FAILSQRSTQ 360 SSDSEKTKST CPDHVAAPTM QNRVPLEFAS GGGERSSTSY QSPVEDSECQ IQETRANLPL 420 QLFSSSPEND SPPKLASSRK YFSSDSSNPM EERSPTSSPA VQKLFPMHST VEAVKYEKMP 480 VGRESNAIAE GSRTHGSILP LELFSGSKRG NAHGSFQQFP SQAGYTSSSG SDHSPSSLNS 540 DAQDRTGRII FKLFDKDPSH FPGTLRTQIY NWLSNSPSEM ESYIRPGCVV LSLYVSMSYV 600 AWEQLEGNLL QYVNSLLHYT DSDFWRKARF LVHTGRQLAS HKDGKIRLCK SWRTLSSPEL 660 ISVSPLAIVG GQETSLLLRG RNLTNPGTKI HCAYMGGYSS MQISGSAYQG TTYDEVSLGG 720 FKVQVSAPSA VGRFFIEVED GFKGNSFPII IADATICKEL RLLESEFDIE AKASDIISEE 780 HAYDGRRPTS REEVLHFLNE LGWLFQRRST CPLFKSSDYL LCRFKFLLIF SVERDYCALV 840 KVLLDILVES NLYMDGLSRE SVEMLSEIQL LSRAVKRRCR KMADLLIHYS ISSIDESSKK 900 YIFLPNLEGA GGITPLHLAA CTSGSDDMVD VLTDDPQEIG LSCWKSLLDV NGQSPYAYAI 960 MRNNHSYNKL VARKFADRRN GQVSVTIGQD EQSGLTAVQL HEMSSRSKQD RSSCAKCAVV 1020 ATKFNKRFPG SQGLLQRPYV HSMLAIAAVC VCVCLFLRGS PDIGSVAPFK WENLDFGTI

Sequence ? help Back to Top

Protein Sequence Length: 1079 aa Download sequence

MEEVGAQLAP PIFMHQALAN RFCEPPSLPR KRDLSYQTPG FQYPNPSQQH VANPRDWNPK  60
QWEWDAVRFI AKPMDTEILQ PGTATAEQRK KERVNGNGNS ITSKKTTAVN EDDDSLQLNL  120
GGRLNSVEEP VSRPNKKVRS GSPGSTNYPM CQVDNCKEDL SNAKDYHRRH KVCEVHSKAT  180
KALVGKHMQR FCQQCSRFHL LSEFDEGKRS CRRRLAGHNR RRRKTQPEDV TSRLLLPVNR  240
DNAGNGNLDI VNLLTALARS QGKNEDKNIN CSSLPNRDQL VQILNKINSL PLPMDLAAKL  300
PNVGVLNRKN QEQPLLGHQN QLNGKNTSSP STMDLLAALS ATLTSSSKDA FAILSQRSTQ  360
SSDSEKTKST CPDHVAAPTM QNRVPLEFAS GGGERSSTSY QSPVEDSECQ IQETRANLPL  420
QLFSSSPEND SPPKLASSRK YFSSDSSNPM EERSPTSSPA VQKLFPMHST VEAVKYEKMP  480
VGRESNAIAE GSRTHGSILP LELFSGSKRG NAHGSFQQFP SQAGYTSSSG SDHSPSSLNS  540
DAQDRTGRII FKLFDKDPSH FPGTLRTQIY NWLSNSPSEM ESYIRPGCVV LSLYVSMSYV  600
AWEQLEGNLL QYVNSLLHYT DSDFWRKARF LVHTGRQLAS HKDGKIRLCK SWRTLSSPEL  660
ISVSPLAIVG GQETSLLLRG RNLTNPGTKI HCAYMGGYSS MQISGSAYQG TTYDEVSLGG  720
FKVQVSAPSA VGRFFIEVED GFKGNSFPII IADATICKEL RLLESEFDIE AKASDIISEE  780
HAYDGRRPTS REEVLHFLNE LGWLFQRRST CPLFKSSDYL LCRFKFLLIF SVERDYCALV  840
KVLLDILVES NLYMDGLSRE SVEMLSEIQL LSRAVKRRCR KMADLLIHYS ISSIDESSKK  900
YIFLPNLEGA GGITPLHLAA CTSGSDDMVD VLTDDPQEIG LSCWKSLLDV NGQSPYAYAI  960
MRNNHSYNKL VARKFADRRN GQVSVTIGQD EQSGLTAVQL HEMSSRSKQD RSSCAKCAVV  1020
ATKFNKRFPG SQGLLQRPYV HSMLAIAAVC VCVCLFLRGS PDIGSVAPFK WENLDFGTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	873	878	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein