PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021283267.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 311aa    MW: 34074.4 Da    PI: 10.1962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021283267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-05157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k Fs++  L  H++ H
  XP_021283267.1 157 FTCGFCKKEFSTSQALGGHQNAH 179
                     89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MLSATMRYST IISKIHFQIN PSINRTSSLS NLLQQTKPFF FLQRPKHQSK AAMETLSGKP  60
CSSDTSNISA ASGESQNKGG GIDGNMMAKL KEKVVVVQES HDYQSNQVRS GLHLSLGAKF  120
SGDEMIHGSE VELKLSSMGS SQANKQQQQT KSKARAFTCG FCKKEFSTSQ ALGGHQNAHK  180
QERAIAKRRK ELDSGALGHR QYPYYSYSSL SQASLYGSFN RALGTRMESM IHKPAPAYPW  240
TTLGCRFGHG GIMMENFQAP RSSTLPTMAA AASSIAAKKP TSSRDFLSKM DLSESDNRQD  300
DDPGLDLSLR L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.13e-26C2H2 family protein