PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282747.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

G2-like

Protein Properties

Length: 409aa MW: 45662.6 Da PI: 6.6436

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282747.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.2	1.4e-31	234	288	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ XP_021282747.1 234 KTRIRWTQDLHDKFVECVKRLGGAEKATPKAILKLMDTEGLTIFHVKSHLQKYRI 288 68****************************************************7 PP
2	Myb_DNA-binding	48.5	2e-15	238	287	3	48
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 rWT+++++++v++vk+lGg t+k+I + m +g+t ++ks++qky+ XP_021282747.1 238 RWTQDLHDKFVECVKRLGGAekaTPKAILKLMDtEGLTIFHVKSHLQKYR 287 9***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MNTQKIDCQE HLEQNLGFSR VCNFEYVNHD GFQQPWNMGI RIQAPATEGG LQQENPGAAK 60 TSNTIMSGFL SPASAFYATE RCMGFSEYGS QGDRSSYTSQ YNKSCNSQLP SFHASGDNFS 120 IESVAQDETN YELRNTFESS EKSYKIPCSN SQGSQVSPHD QTNFLGNNAV TVGSHYSVPF 180 RVNQDQRAYC NSYRSPLAQV SIFQQGKQSS NCSSGTFSVS SGNSVSTGAA LASKTRIRWT 240 QDLHDKFVEC VKRLGGAEKA TPKAILKLMD TEGLTIFHVK SHLQKYRIAK YMPDSAEGKS 300 DKRSSTNDVT QLDVKTGLHL TEALQLQLDV QRRLHEQLEI QRNLQLRIEE QGRQLKMMID 360 QQQKTNESLL KKQDLDITPF DHDPSFSLED VEVSIAESSG NAHFPSKIS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MNTQKIDCQE HLEQNLGFSR VCNFEYVNHD GFQQPWNMGI RIQAPATEGG LQQENPGAAK  60
TSNTIMSGFL SPASAFYATE RCMGFSEYGS QGDRSSYTSQ YNKSCNSQLP SFHASGDNFS  120
IESVAQDETN YELRNTFESS EKSYKIPCSN SQGSQVSPHD QTNFLGNNAV TVGSHYSVPF  180
RVNQDQRAYC NSYRSPLAQV SIFQQGKQSS NCSSGTFSVS SGNSVSTGAA LASKTRIRWT  240
QDLHDKFVEC VKRLGGAEKA TPKAILKLMD TEGLTIFHVK SHLQKYRIAK YMPDSAEGKS  300
DKRSSTNDVT QLDVKTGLHL TEALQLQLDV QRRLHEQLEI QRNLQLRIEE QGRQLKMMID  360
QQQKTNESLL KKQDLDITPF DHDPSFSLED VEVSIAESSG NAHFPSKIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	9e-77	G2-like family protein