PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282713.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 541aa MW: 58840.6 Da PI: 8.9375

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_021282713.1 98 FVCEICNKGFQRDQNLQLHRRGH 120 89*******************88 PP
2	zf-C2H2	12	0.00064	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_021282713.1 174 WKCDKCSKKYAVQSDWKAHSKTC 196 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MSNITAGDGG SLSSGNTAGE EVHQQQQQQQ QQQQQQEQVN HFHGLNSLPS STNSNGSTTT 60 PQEQPPPAKK KRNLPGTPDP NAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH 120 NLPWKLRQRT STEIRKRVYV CPEPSCVHHN PARALGDLTG IKKHFCRKHG EKKWKCDKCS 180 KKYAVQSDWK AHSKTCGTKE YKCDCGTIFS RRDSFITHRA FCDALTEENN KANQGLVPNV 240 GSNLQAQVTE LIPAIPINNN PNTSAMNISD PFSHDTKSPL QPLSMAGSMF SNNPGNLFGE 300 EKSNVSNPSP SCLQLNANNS STLFEGNGHL FSGSASMSAT ALLQKAAQMG ATATTGSLNS 360 PLMGKSFTTS MAPPSFVSMQ TPQSNQPQML GADAGFTNQF MQKSQQEIRS DQFFNANGGV 420 DHQSSAVNNM GMFSGVFDQN NALLKSIEND QRGASSNSGL STPRSGGANP SGLSGFGGDM 480 MTVDFLGIGG SRPRNLLEKQ HHHHHQPLQD HLEFGGIAQA RLQGLSHFQQ HAALEKPMWK 540 V

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MSNITAGDGG SLSSGNTAGE EVHQQQQQQQ QQQQQQEQVN HFHGLNSLPS STNSNGSTTT  60
PQEQPPPAKK KRNLPGTPDP NAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH  120
NLPWKLRQRT STEIRKRVYV CPEPSCVHHN PARALGDLTG IKKHFCRKHG EKKWKCDKCS  180
KKYAVQSDWK AHSKTCGTKE YKCDCGTIFS RRDSFITHRA FCDALTEENN KANQGLVPNV  240
GSNLQAQVTE LIPAIPINNN PNTSAMNISD PFSHDTKSPL QPLSMAGSMF SNNPGNLFGE  300
EKSNVSNPSP SCLQLNANNS STLFEGNGHL FSGSASMSAT ALLQKAAQMG ATATTGSLNS  360
PLMGKSFTTS MAPPSFVSMQ TPQSNQPQML GADAGFTNQF MQKSQQEIRS DQFFNANGGV  420
DHQSSAVNNM GMFSGVFDQN NALLKSIEND QRGASSNSGL STPRSGGANP SGLSGFGGDM  480
MTVDFLGIGG SRPRNLLEKQ HHHHHQPLQD HLEFGGIAQA RLQGLSHFQQ HAALEKPMWK  540
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-106	C2H2 family protein