PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282700.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 458aa MW: 50213.2 Da PI: 8.8112

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	59	79	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H XP_021282700.1 59 CEICGKGFQRDQNLQLHRRGH 79 *******************88 PP
2	zf-C2H2	13.5	0.00021	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_021282700.1 133 WKCEKCSKRYAVQSDWKAHSKTC 155 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MLEQMTEESI SNGFVQNPIA GSNPPLAKKK RNLPGTPDPE AEVIALSPKT LMATNRFLCE 60 ICGKGFQRDQ NLQLHRRGHN LPWKLKQRTT KEARKRVYVC PEKTCVHHHP SRALGDLTGI 120 KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY KCDCGTLFSR RDSFITHRAF 180 CDALAEETAR VTAASNMHSL ATSNINYHLM GNPLGPGMAQ HFSSIFKPIS SNDETLDQTR 240 RGLSLWMGQA SQGHDAIGKS LQDIHQFGSV NAGSIYSDPL VSTSNDPASD YQLNWVFGNK 300 VSSSNAEELT STSLPLNNVK ENGSQLVSVP SLFSTQHHPH QTPSANMSAT ALLQKAAQIG 360 ATSTDTSFLG SFAAKCSNSQ VEDGNKYSGL YGSNTPATTL GSDLESSAND TSTLNQLQMY 420 PAKRRHTQNE DSVGGQTRDF LGVGVQAICH PSSINGWI

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MLEQMTEESI SNGFVQNPIA GSNPPLAKKK RNLPGTPDPE AEVIALSPKT LMATNRFLCE  60
ICGKGFQRDQ NLQLHRRGHN LPWKLKQRTT KEARKRVYVC PEKTCVHHHP SRALGDLTGI  120
KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY KCDCGTLFSR RDSFITHRAF  180
CDALAEETAR VTAASNMHSL ATSNINYHLM GNPLGPGMAQ HFSSIFKPIS SNDETLDQTR  240
RGLSLWMGQA SQGHDAIGKS LQDIHQFGSV NAGSIYSDPL VSTSNDPASD YQLNWVFGNK  300
VSSSNAEELT STSLPLNNVK ENGSQLVSVP SLFSTQHHPH QTPSANMSAT ALLQKAAQIG  360
ATSTDTSFLG SFAAKCSNSQ VEDGNKYSGL YGSNTPATTL GSDLESSAND TSTLNQLQMY  420
PAKRRHTQNE DSVGGQTRDF LGVGVQAICH PSSINGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-166	C2H2 family protein