PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282354.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 1153aa MW: 128591 Da PI: 9.2629

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5e-08	16	51	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W + E e++++a +++G++ Wk++a+ + +R+ +++ XP_021282354.1 16 QWNKVEIERFYKAYREYGKD-WKKVAAAVR-NRSTEMV 51 6***************99.*****.99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1153 aa Download sequence
MPEIQAKKLA DKLGSQWNKV EIERFYKAYR EYGKDWKKVA AAVRNRSTEM VEALYLMNRA 60 YLSLPDGTAS VIGLIAMMTD HYSVLGGSDC ERESNEPSEI PQKAQKRKRA KVHLGSSKED 120 VVQPLSIASS QGCLSLLKKA GLNGIHPHAV RKRTPRVPVS YSYRRDDTES DIPPNKRVKK 180 SETDDNDDEH VAALTLTGAL QRGGSPQVSQ TPYKRAECKR SSPVESYDRM SPQPETTKAK 240 LDDSSYECWM EGRPRGMEPV IGTHARDADP LMDMEVVVTI EGHRKGKKFY RKKMKVEETK 300 NNLSDDGGEA CSGTDERIRG STLKGKVDME ISSAKSEQLS PWSQRKRSNK KLVFGDESSS 360 IDALLTLANL STSMLPTSIM ESGLESSVKL KENRITLESV DKSSAPEAAS TGHHRDKIKH 420 LGPKEKVLNS ITGVEDATSR KLKVGRNSAM EDNVVSEAKL QPEPTNNSWK RKRKSFSSKL 480 QISNAEAPMD SHLRQSFDKE DMAEEQNKYL TKGKCGGQSS VQSRQWKSFR VSEDSPTNDD 540 PKMAGIDSVV LTSQVPVPNP VSLATKHQSR RKMNLKRALL STDRSSSKCT LKNQPNKQSV 600 TQDRLKEQLS SCLSSNLARR WYSFEWFYSA IDYAWFAKRE FVEYLNHVGL GHVPRLTRVE 660 WGVIRSSLGK PRRFSERFLH EEREKLKQYR ESVRQHYSQL RVGTREGLPT DLAYPLSVGQ 720 RVIAIHPKTR EVHDGKVLTV DHDRCRVQFD SPELGVEFVT DVDCMPLNPL ENMPEALRRQ 780 NLAFDKFSMT PKQSQVNSHS DFGGSMVFTS TGRLENGTSP VNISANQIKV DANCNILHAK 840 AAVPHVVSAH QAAYGQPLTM AHIQGRETAI RAMSELNGAL DKKEALLMEL RNMNNDISEN 900 RNGESCLKDS EPFKKHIATV LVELKEASGQ ASSALLNLRQ RNAYPTNLLS SWQKPPTNSN 960 FFGGLTSSVD SSHVSPESGS GVGDIVQGSR LKAHAMVDAA IKAMSSMKEG EDAFMRIGEA 1020 LDSLDKRQFT SDIRMPLMKS REQENGSMGY RSHLVSSTSK PVAAVWATNP KSQEACDKNE 1080 EQVPSELIAS CVATLLMIET CTERQYPPAD VAQIIDSAVT SLHPCFPQNL PIYREIQMCM 1140 GRIKTQILAL IPT

Sequence ? help Back to Top

Protein Sequence Length: 1153 aa Download sequence

MPEIQAKKLA DKLGSQWNKV EIERFYKAYR EYGKDWKKVA AAVRNRSTEM VEALYLMNRA  60
YLSLPDGTAS VIGLIAMMTD HYSVLGGSDC ERESNEPSEI PQKAQKRKRA KVHLGSSKED  120
VVQPLSIASS QGCLSLLKKA GLNGIHPHAV RKRTPRVPVS YSYRRDDTES DIPPNKRVKK  180
SETDDNDDEH VAALTLTGAL QRGGSPQVSQ TPYKRAECKR SSPVESYDRM SPQPETTKAK  240
LDDSSYECWM EGRPRGMEPV IGTHARDADP LMDMEVVVTI EGHRKGKKFY RKKMKVEETK  300
NNLSDDGGEA CSGTDERIRG STLKGKVDME ISSAKSEQLS PWSQRKRSNK KLVFGDESSS  360
IDALLTLANL STSMLPTSIM ESGLESSVKL KENRITLESV DKSSAPEAAS TGHHRDKIKH  420
LGPKEKVLNS ITGVEDATSR KLKVGRNSAM EDNVVSEAKL QPEPTNNSWK RKRKSFSSKL  480
QISNAEAPMD SHLRQSFDKE DMAEEQNKYL TKGKCGGQSS VQSRQWKSFR VSEDSPTNDD  540
PKMAGIDSVV LTSQVPVPNP VSLATKHQSR RKMNLKRALL STDRSSSKCT LKNQPNKQSV  600
TQDRLKEQLS SCLSSNLARR WYSFEWFYSA IDYAWFAKRE FVEYLNHVGL GHVPRLTRVE  660
WGVIRSSLGK PRRFSERFLH EEREKLKQYR ESVRQHYSQL RVGTREGLPT DLAYPLSVGQ  720
RVIAIHPKTR EVHDGKVLTV DHDRCRVQFD SPELGVEFVT DVDCMPLNPL ENMPEALRRQ  780
NLAFDKFSMT PKQSQVNSHS DFGGSMVFTS TGRLENGTSP VNISANQIKV DANCNILHAK  840
AAVPHVVSAH QAAYGQPLTM AHIQGRETAI RAMSELNGAL DKKEALLMEL RNMNNDISEN  900
RNGESCLKDS EPFKKHIATV LVELKEASGQ ASSALLNLRQ RNAYPTNLLS SWQKPPTNSN  960
FFGGLTSSVD SSHVSPESGS GVGDIVQGSR LKAHAMVDAA IKAMSSMKEG EDAFMRIGEA  1020
LDSLDKRQFT SDIRMPLMKS REQENGSMGY RSHLVSSTSK PVAAVWATNP KSQEACDKNE  1080
EQVPSELIAS CVATLLMIET CTERQYPPAD VAQIIDSAVT SLHPCFPQNL PIYREIQMCM  1140
GRIKTQILAL IPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-159	MYB_related family protein