PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282282.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Dof

Protein Properties

Length: 486aa MW: 52583.7 Da PI: 6.4995

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.1e-39	94	153	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ XP_021282282.1 94 PDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 153 78999*****************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MNGGDPAFKL FGRKIAVPEP QIHAGDTSSE ITNPGTETSH ANTSGDPDKS ITVENDEEEH 60 QTSMKSNEIQ TNSKLKDEQS ETNSADQEKV FKKPDKVLPC PRCNSLDTKF CYFNNYNVNQ 120 PRHFCKNCQR YWTAGGTMRN VPIGAGRRKN KHLASQYRQI IVSSDGVPMT RIETPDSANQ 180 QLLSPGESTT AFRPSMGNGT VLKFGAEAPL CESMETVLSL GDQKRRVEMG TVSCGEIREE 240 PSSCGSSATP CSIPGNDLPG NVMQKERVGL AGPNEQNTHP PQCYPIPPWI FPWNPGMNNV 300 APMAVGQSSS ERIGALNSGA SNAVQWCPTP MMAVPGFCPP NVPLQFVHAY WGCMPLWAAS 360 GGNVSFSGSN GCLSPSSSTS NSCCSGNGSP RLGKHSREAN FVEEQSEKCV LVPKTLRIDD 420 PNEASRSPIW ATLGIKPDQK DPLRGGKIFN AFESKAEGKD HLLDGSYILE ANPAALSRSH 480 TFQEST

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MNGGDPAFKL FGRKIAVPEP QIHAGDTSSE ITNPGTETSH ANTSGDPDKS ITVENDEEEH  60
QTSMKSNEIQ TNSKLKDEQS ETNSADQEKV FKKPDKVLPC PRCNSLDTKF CYFNNYNVNQ  120
PRHFCKNCQR YWTAGGTMRN VPIGAGRRKN KHLASQYRQI IVSSDGVPMT RIETPDSANQ  180
QLLSPGESTT AFRPSMGNGT VLKFGAEAPL CESMETVLSL GDQKRRVEMG TVSCGEIREE  240
PSSCGSSATP CSIPGNDLPG NVMQKERVGL AGPNEQNTHP PQCYPIPPWI FPWNPGMNNV  300
APMAVGQSSS ERIGALNSGA SNAVQWCPTP MMAVPGFCPP NVPLQFVHAY WGCMPLWAAS  360
GGNVSFSGSN GCLSPSSSTS NSCCSGNGSP RLGKHSREAN FVEEQSEKCV LVPKTLRIDD  420
PNEASRSPIW ATLGIKPDQK DPLRGGKIFN AFESKAEGKD HLLDGSYILE ANPAALSRSH  480
TFQEST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.1	5e-70	Dof family protein