PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282129.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CPP

Protein Properties

Length: 696aa MW: 77148.8 Da PI: 6.1785

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.9	1.3e-15	415	452	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCk+skClk+YC+Cfaag +C e C+C+dC+Nk XP_021282129.1 415 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKP 452 89**********************************96 PP
2	TCR	53.7	4e-17	499	538	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ XP_021282129.1 499 RHKRGCNCKKSSCLKKYCECFQAGVGCSPSCRCEGCKNRF 538 589***********************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MDSPDKTQIT PTPSLSKFED SPVFKYINSL SPIELAKFRQ TDNAFNSLAF LSPSSLFPSP 60 QISCHRESRF SVKRHHFSAA SNSSVLQSSN DLNSNEGASK AIEQSDFYDE QPGCLNSGSS 120 FKGVSSDRLD EQSDLAIELP RTLKYDCGSP DGNLEPCDEI LKNTSEKVTR QEGSPFQHNK 180 DEGEERQQSF ENERDLRKIR RIMWSEESTG CDWVAIVSDV ADLLTMNSSI INENTEGQDR 240 RAADPGTTSF ISTILQFPLD NSNNLESTET GDPNGSCKQS EFREPVTDQT PAILSTCLLD 300 KLVVSDSGLN KDDEGEKCNL YSHQRSIRRR CLVFEKSPGF GLHLNSLANT SKDQNPLSKL 360 TPSSMKRGEV PQCNKAVVKE NSPETPATVG GNETDLNSPE KKRTKFEHVE ENAACKRCNC 420 KRSKCLKLYC DCFAAGLYCI EPCSCQDCFN KPIHENKVLE TRRQIESRNP LAFAPKVIRI 480 TDSVSDSGGE TNKTPASARH KRGCNCKKSS CLKKYCECFQ AGVGCSPSCR CEGCKNRFGQ 540 KGGGDESESD GEDLETCERN ASEKNSHDIV INRSEEYPDL SVPSSDLSRL PFAFSGKLSG 600 SFLHSIRLSP QLCTTQELGS SDSSSFRPKF ESHLQAIPED KTPETLKHNL SPVLEATSPN 660 CKRVSLPHRE CSSSNTWRSR KLILRSVPPF PSFCQP

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MDSPDKTQIT PTPSLSKFED SPVFKYINSL SPIELAKFRQ TDNAFNSLAF LSPSSLFPSP  60
QISCHRESRF SVKRHHFSAA SNSSVLQSSN DLNSNEGASK AIEQSDFYDE QPGCLNSGSS  120
FKGVSSDRLD EQSDLAIELP RTLKYDCGSP DGNLEPCDEI LKNTSEKVTR QEGSPFQHNK  180
DEGEERQQSF ENERDLRKIR RIMWSEESTG CDWVAIVSDV ADLLTMNSSI INENTEGQDR  240
RAADPGTTSF ISTILQFPLD NSNNLESTET GDPNGSCKQS EFREPVTDQT PAILSTCLLD  300
KLVVSDSGLN KDDEGEKCNL YSHQRSIRRR CLVFEKSPGF GLHLNSLANT SKDQNPLSKL  360
TPSSMKRGEV PQCNKAVVKE NSPETPATVG GNETDLNSPE KKRTKFEHVE ENAACKRCNC  420
KRSKCLKLYC DCFAAGLYCI EPCSCQDCFN KPIHENKVLE TRRQIESRNP LAFAPKVIRI  480
TDSVSDSGGE TNKTPASARH KRGCNCKKSS CLKKYCECFQ AGVGCSPSCR CEGCKNRFGQ  540
KGGGDESESD GEDLETCERN ASEKNSHDIV INRSEEYPDL SVPSSDLSRL PFAFSGKLSG  600
SFLHSIRLSP QLCTTQELGS SDSSSFRPKF ESHLQAIPED KTPETLKHNL SPVLEATSPN  660
CKRVSLPHRE CSSSNTWRSR KLILRSVPPF PSFCQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	3e-97	CPP family protein