PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021282071.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 361aa    MW: 40466.9 Da    PI: 6.6154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021282071.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001284306123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_021282071.1 284 FMCRKCGKAFAVRGDWRTHEKNC 306
                     89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MADYPYSNFF SGWFKFNPLQ HYPSPNPSPQ QPSSYTQNYF YSSNTTFVTN ETNPFFHYQT  60
SSSSPPSPPV REALPLLSLS PTRHDKEEEV QDDEDQDQEH SCTAMDVDKS KGKEEGRLLF  120
TSSAGSASAS AAEDETVTVA LHIGLPSPSA SELASVLSSS SEITDKDGDG DDSGYPVNRL  180
NKGQYWIPTP SQILIGPTQF SCPVCCKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG  240
MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR  300
THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHAAYGI DGLEEDDEPA SEVEQDNESM  360
Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-136C2H2 family protein