PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021282000.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NF-YA
Protein Properties Length: 363aa    MW: 40164 Da    PI: 8.7528
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021282000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32174230158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh hA+rR+Rg+gGrF
  XP_021282000.1 174 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHLHAMRRARGCGGRF 230
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MHQKPDGKNH PEPNVNNSKA YTVRSQPWWC STQQDSISTD VLGESRTNLS PGKHPNGGLG  60
TQTSESQHGE LTDHKICGSK EMWLTVLPHP DGKCGDEQPH LPHAVPFMPP TMGEYVAPRT  120
QLELVGHSIA FPSYPYADPY YGGAMPPYGP QSLVHPHCLG VHPARMALPL EMAEEPVYVN  180
AKQYHGILRR RQSRAKAELE KKLIKVRKPY LHESRHLHAM RRARGCGGRF LNTKKLDSDA  240
SNATPDKGSD TSSNLSSHLT NLLSGKSISS HMSQDVNSSG GHREVTESEL PGTDMQQAFS  300
ISNGKIYING NGNGNVRYSH HQGFHFSTSR SLSDKMMEEG DCPRQQHERI VANAVPHRAL  360
TIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-35NF-YA family protein