PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021281990.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 468aa    MW: 52155.7 Da    PI: 7.4538
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021281990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.26.1e-32161265199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_021281990.1 161 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGElGK 255
                     89***************************966778999*************************************************66699999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_021281990.1 256 DRLFIDWRRR 265
                     9999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    
MGVYCPSLVF VFGSCWSEEE STDFLIVQRD PRGKVTIGAK KFMDFGSSGR EGFSEEEQMG  60
KGKLPFSYSS SSSPSSSSSQ HKTHLVPPLI NCRWEKQPHP IYDSHHQMSP NWLGNRYEPE  120
EDNEATATAT ASEADSKRVD SDSTPELKSS ASANIEKEHM FDKVVTPSDV GKLNRLVIPK  180
QHAEKYFPLD SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA  240
GDIVSFQRGV GELGKDRLFI DWRRRPDAPD PASFHPHQHF SFHRSIPWSP LLMRPPPTGR  300
DHFHLSQIHP LNRNSYYGGY PTGSNVMNPA GGTMESVFYL RSAVAAAGPQ MGMGMGMGLG  360
MMEWQQQTGG VVEPIVFDSV PVVQGKAAAK RLRLFGVNME CPISESSGEC EMLSPTTIAN  420
ATMASQPPQL SSPSQHPLQL RLYNGTPLPT DFRNANKGKA SMSLDLDM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-75B3 family protein