PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281471.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 458aa MW: 52086.1 Da PI: 6.6551

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281471.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.8e-06	2	26	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k++lC+ffa G C G+ C F+H+ XP_021281471.1 2 PKRVLCKFFAH-GACLKGEHCEFSHD 26 79***6666.***********5 PP
2	zf-CCCH	25.8	1.9e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C+yG+rC++ H+ XP_021281471.1 34 ICTYYQK-GICSYGSRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	18.4	3.7e-06	144	165	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C++G++C+ +Hg XP_021281471.1 144 SICS-FAAAGNCPRGEKCPHIHG 165 5788.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MPKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GICSYGSRCR YEHVKASQSD 60 LSASSSSTMP RQSLISDSVP LGPPLTTTFG GSVVHPSASA EFPGSSRAFL PPTKQAWNLE 120 SEHQAVTDNG DFVEPRSANP AEQSICSFAA AGNCPRGEKC PHIHGDLCAT CGKHCLHPFR 180 PQEREEHIKM CEKKQKHLEA LKSSQEIECS VCLDRVLSKP TAAERKFGLL SECDHPFCIS 240 CIRNWRSSSP SSGMDVNTAL RACPICRKLS YFVIPSVIWY CTPEEKQEIV DSYKAKLRSI 300 DCKHFNFGNG NCPFGTSCFY KHTVKPGSYV WKYHRPPPRR FNFMDLDAIF DVFEQLIAED 360 EMDIFDAEDF EYDDLTPMEM AFLLMQQDFE SMWSSWCFDR PPPFLSGRRW ILEFVNWHAY 420 RDGRLEEVVL RHLGAEDGHT IIAKNIRLSD YLSDLHIG

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MPKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GICSYGSRCR YEHVKASQSD  60
LSASSSSTMP RQSLISDSVP LGPPLTTTFG GSVVHPSASA EFPGSSRAFL PPTKQAWNLE  120
SEHQAVTDNG DFVEPRSANP AEQSICSFAA AGNCPRGEKC PHIHGDLCAT CGKHCLHPFR  180
PQEREEHIKM CEKKQKHLEA LKSSQEIECS VCLDRVLSKP TAAERKFGLL SECDHPFCIS  240
CIRNWRSSSP SSGMDVNTAL RACPICRKLS YFVIPSVIWY CTPEEKQEIV DSYKAKLRSI  300
DCKHFNFGNG NCPFGTSCFY KHTVKPGSYV WKYHRPPPRR FNFMDLDAIF DVFEQLIAED  360
EMDIFDAEDF EYDDLTPMEM AFLLMQQDFE SMWSSWCFDR PPPFLSGRRW ILEFVNWHAY  420
RDGRLEEVVL RHLGAEDGHT IIAKNIRLSD YLSDLHIG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-145	C3H family protein