PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281139.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 511aa MW: 55136.8 Da PI: 8.962

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281139.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	269	327	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r++ed++++++tYeg+Hnh+ XP_021281139.1 269 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCSEDKSILITTYEGNHNHP 327 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MEKKHRRELT FLRSGDFLRP NSGLHDRTLD DSSDHVKPTI KEMDFFSTNN QPHDPLQESK 60 INNGSSSLFD SGVNTGLNLL SSSPRVSRTT NEEKPNSEMS ALRIELQRLH EENRRLRSML 120 DQITKNYNEL QGQLFMAVQK QAHGNQGEQK GAVNGMSSLP VSVQQVMDPR PSAALDVNAP 180 SASDDKTQEL SVSPVNTMEV VSKERDHQMT RISGKHVSVE DGTDRTSQSW GSPKSPKVEQ 240 SKNEEQVSEV PFRKARVSVR ARSEAPLISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC 300 PVRKQVQRCS EDKSILITTY EGNHNHPLPP AATAMANTTS AAAAMLLSGS TTSKDGLSSS 360 GYFPSLPYGS TMATLSASAP FPTITLDLTQ GPNAVPFLRP PPSTATFPLP LQGYPQLLGH 420 SMFSPTKLSA LPVTQLGQRP ASMVDTVTAA IASDPNFTAA LAAAISTIMG APPSNSGNTI 480 NNGGNSNASN RVPGLPGSPQ LPQSCTTFST N

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MEKKHRRELT FLRSGDFLRP NSGLHDRTLD DSSDHVKPTI KEMDFFSTNN QPHDPLQESK  60
INNGSSSLFD SGVNTGLNLL SSSPRVSRTT NEEKPNSEMS ALRIELQRLH EENRRLRSML  120
DQITKNYNEL QGQLFMAVQK QAHGNQGEQK GAVNGMSSLP VSVQQVMDPR PSAALDVNAP  180
SASDDKTQEL SVSPVNTMEV VSKERDHQMT RISGKHVSVE DGTDRTSQSW GSPKSPKVEQ  240
SKNEEQVSEV PFRKARVSVR ARSEAPLISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC  300
PVRKQVQRCS EDKSILITTY EGNHNHPLPP AATAMANTTS AAAAMLLSGS TTSKDGLSSS  360
GYFPSLPYGS TMATLSASAP FPTITLDLTQ GPNAVPFLRP PPSTATFPLP LQGYPQLLGH  420
SMFSPTKLSA LPVTQLGQRP ASMVDTVTAA IASDPNFTAA LAAAISTIMG APPSNSGNTI  480
NNGGNSNASN RVPGLPGSPQ LPQSCTTFST N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01720.1	1e-105	WRKY family protein