PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021281121.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 511aa    MW: 57264.2 Da    PI: 6.3782
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021281121.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.48.9e-1091515061374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lLlecA a+s ++l +a+++L +l ++asp++ +  +R++ayf++A+++r+ +s+ ++++ l   ++       +  a+++f++vsP++kf+
  XP_021281121.1 151 LITLLLECAVAISVDNLGEAHRMLLELTQMASPYApSCAERVVAYFAKAMSSRVINSWLGICSPLINYKS-------VHCAFQAFNNVSPFIKFA 238
                     5789*******************************8999**********************986644443.......457899************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+t NqaIlea+++ +rvHiiD+di+qGlQWpaL++ La+R egpp++R+Tg+gs    s e l etg++L++fA++lg++fef++ +ak++ ++
  XP_021281121.1 239 HFTSNQAILEALHRRDRVHIIDLDIMQGLQWPALFHILATRIEGPPHVRMTGMGS----SMELLVETGKQLSNFAKRLGMSFEFHP-IAKKFGEI 328
                     *******************************************************....***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++ + +v++gE++aV++    h+l+d +++  +    +L+l+ +l P+v+++veq++ h ++sFl+rf+ +l+yys++fdsl a lp+++  r+ 
  XP_021281121.1 329 DITMVQVRRGETIAVHWLQ--HSLYDATGPEWK----TLRLFEQLAPRVITLVEQDLFH-GGSFLDRFVGSLHYYSTMFDSLGAYLPADDPSRHR 416
                     ******************9..999988888888....*********************9.789******************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+ ll rei n++a  g +r  +  ++++Wr+ l +  F +vp+s++ ++qa+l+l++++  +gy++ + +g+l lgWkd +L+++SaW+
  XP_021281121.1 417 IEHCLLYREINNILAIGGPARSGED-KFKHWRSELARNCFVQVPMSSNSMAQAQLILNMFPpAHGYSLVQGDGTLRLGWKDTSLFTASAWT 506
                     ********************77665.5***************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    
MMKGGFEVVH ATLDIIQPHE PIWDFASAGF PTTSVSSMPR HAVENRCVNL ERNELSEWME  60
QVTKQLIDDL PAETETDSSL QADASMVCED SFAPSPLGDF RARKPVRRSF LDGGGDEIQW  120
SNEQGNQTSN FCENGVNGRG LSRLDEQGLS LITLLLECAV AISVDNLGEA HRMLLELTQM  180
ASPYAPSCAE RVVAYFAKAM SSRVINSWLG ICSPLINYKS VHCAFQAFNN VSPFIKFAHF  240
TSNQAILEAL HRRDRVHIID LDIMQGLQWP ALFHILATRI EGPPHVRMTG MGSSMELLVE  300
TGKQLSNFAK RLGMSFEFHP IAKKFGEIDI TMVQVRRGET IAVHWLQHSL YDATGPEWKT  360
LRLFEQLAPR VITLVEQDLF HGGSFLDRFV GSLHYYSTMF DSLGAYLPAD DPSRHRIEHC  420
LLYREINNIL AIGGPARSGE DKFKHWRSEL ARNCFVQVPM SSNSMAQAQL ILNMFPPAHG  480
YSLVQGDGTL RLGWKDTSLF TASAWTSRAS R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-144GRAS family protein