PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281006.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 440aa MW: 48582.5 Da PI: 9.3257

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_021281006.1 76 FVCEICNKGFQRDQNLQLHRRGH 98 89*******************88 PP
2	zf-C2H2	12.4	0.00048	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_021281006.1 152 WKCEKCSKIYAVQSDWKAHSKTC 174 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MFPAAMSNST SLSEEASVSS GTRVQDFGGL NPIVSTISPQ TQPQKVKKKR SLPGNPDPDA 60 EVIALSPKTL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNSK EIKKRAYVCP 120 EPTCVHHHPS RALGDLTGIK KHYCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTREYR 180 CDCGTLFSRK DSFITHRAFC DALAEESARL SANQLASTAT IPALHNFPSQ TNPSPSSLFP 240 FQTHISLNPW DSTTTPNPNP NNPLHVKPES HHFSPFYQEQ QPPRQPPKAL ITSPFQSLHV 300 SNNPSSNAAM SAIPHLSATA LLQKAATVGA TATQINNNNN NNMASHVSPD FMGFAAGNLV 360 TWQKSSDRFT RDFLGLTGDH QHPHHDHGGG NGNVNISMNV RDVLTYAGGV ELQHLERNHS 420 LLKPQGFGFA EPASETWGDC

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MFPAAMSNST SLSEEASVSS GTRVQDFGGL NPIVSTISPQ TQPQKVKKKR SLPGNPDPDA  60
EVIALSPKTL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNSK EIKKRAYVCP  120
EPTCVHHHPS RALGDLTGIK KHYCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTREYR  180
CDCGTLFSRK DSFITHRAFC DALAEESARL SANQLASTAT IPALHNFPSQ TNPSPSSLFP  240
FQTHISLNPW DSTTTPNPNP NNPLHVKPES HHFSPFYQEQ QPPRQPPKAL ITSPFQSLHV  300
SNNPSSNAAM SAIPHLSATA LLQKAATVGA TATQINNNNN NNMASHVSPD FMGFAAGNLV  360
TWQKSSDRFT RDFLGLTGDH QHPHHDHGGG NGNVNISMNV RDVLTYAGGV ELQHLERNHS  420
LLKPQGFGFA EPASETWGDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-125	C2H2 family protein