PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280421.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARF

Protein Properties

Length: 709aa MW: 80089.8 Da PI: 7.3626

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.9	2.2e-24	144	246	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k+ltpsd++ +g +++pk++a++ +++++ +++l++ d++g +W++++i+r++++r++lt+GW+ Fv +++L +gD+++F + ++ XP_021280421.1 144 FSKKLTPSDTNXHGGFSFPKRHANDGclppldMSQHTPQQELVVIDLHGSEWRFRHIFRGQPKRHLLTSGWSTFVTSKKLVAGDTFIFL--RGDN 236 88*******************777*9666666679********************************************..3489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ XP_021280421.1 237 GELRVGVHRA 246 999**987 PP
2	Auxin_resp	101.9	8.5e-34	271	353	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha+st+s+F+++Y+P++s+seF++++++++k+ ++ +s+G+Rf m+fe++++ e+r+ Gt+ g++d+d vrWpnS+Wr+Lk XP_021280421.1 271 AFHAFSTRSMFTIYYRPWTSSSEFIIPLDQYMKSAEIDYSIGTRFGMQFEGKECGEQRVLGTILGTEDVDRVRWPNSEWRCLK 353 679******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MYGERNGVKA KVTFQSRKHI DVDGLRRPPN NKGEKDDLYL KLWHACAGPS VYVPRAGEKV 60 FYXPQGHMEQ VEAYVNKDGT MEMPIYNLPS KILCRVLHVQ LKAETGTDEV FANITLLPEA 120 EQDELSMEHR NYQALPRVAL TXFFSKKLTP SDTNXHGGFS FPKRHANDGC LPPLDMSQHT 180 PQQELVVIDL HGSEWRFRHI FRGQPKRHLL TSGWSTFVTS KKLVAGDTFI FLRGDNGELR 240 VGVHRATTLM NNTSTSVISG HGMRHGILAS AFHAFSTRSM FTIYYRPWTS SSEFIIPLDQ 300 YMKSAEIDYS IGTRFGMQFE GKECGEQRVL GTILGTEDVD RVRWPNSEWR CLKVKWDPTS 360 DANFRPERVC PWNIEPIESA NRKKPFILRQ QKRARTDDAS SPGLSSLLMD GMWRGSVKYE 420 SQSSSGVLQG QEDDTDVNQS CALRQPLPHL VLPLDPDCAS MQPQMENQLE IQVPICNSFY 480 QCTSSRALYS GACLGLHNNW PPTVSSYGVD DDALARRKFS VPYVNSQEWR TLVLRNENET 540 SLCEPTGGHR CMIFGVNLVN GPPELPSPQV LTSSELKRLC SIPQTSQSSV SEPSKVTSSK 600 QCNNSCSVSN RSCTKVLKYG TALGRSVDLT RFNGYENLIS ELDRMFDFKG RLIAGSSGWH 660 VTYTDDEGDM MLLGDYPWQK FQYEVRRIVI CPMEEIDRLN QSSPNSTSQ

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MYGERNGVKA KVTFQSRKHI DVDGLRRPPN NKGEKDDLYL KLWHACAGPS VYVPRAGEKV  60
FYXPQGHMEQ VEAYVNKDGT MEMPIYNLPS KILCRVLHVQ LKAETGTDEV FANITLLPEA  120
EQDELSMEHR NYQALPRVAL TXFFSKKLTP SDTNXHGGFS FPKRHANDGC LPPLDMSQHT  180
PQQELVVIDL HGSEWRFRHI FRGQPKRHLL TSGWSTFVTS KKLVAGDTFI FLRGDNGELR  240
VGVHRATTLM NNTSTSVISG HGMRHGILAS AFHAFSTRSM FTIYYRPWTS SSEFIIPLDQ  300
YMKSAEIDYS IGTRFGMQFE GKECGEQRVL GTILGTEDVD RVRWPNSEWR CLKVKWDPTS  360
DANFRPERVC PWNIEPIESA NRKKPFILRQ QKRARTDDAS SPGLSSLLMD GMWRGSVKYE  420
SQSSSGVLQG QEDDTDVNQS CALRQPLPHL VLPLDPDCAS MQPQMENQLE IQVPICNSFY  480
QCTSSRALYS GACLGLHNNW PPTVSSYGVD DDALARRKFS VPYVNSQEWR TLVLRNENET  540
SLCEPTGGHR CMIFGVNLVN GPPELPSPQV LTSSELKRLC SIPQTSQSSV SEPSKVTSSK  600
QCNNSCSVSN RSCTKVLKYG TALGRSVDLT RFNGYENLIS ELDRMFDFKG RLIAGSSGWH  660
VTYTDDEGDM MLLGDYPWQK FQYEVRRIVI CPMEEIDRLN QSSPNSTSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	1e-151	ARF family protein