PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280398.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 427aa MW: 46509.6 Da PI: 7.7367

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.6	2.3e-40	189	266	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ XP_021280398.1 189 RCQVEGCHVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 266 6**************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MENGGNMFMG NRGQTGNSSI NLAWDIRELN PTSATGFDWG GNNNNTTNGL NLYATSTATT 60 NAAAATRAET TASSCTTLPE VSTAHPLMFL PHHDNATLAH HLNQQHALYT GDGSHTHPDP 120 HLVCLKLGKR HYFEDSTALS DRHVAGGFTI GKKGKPYYNN NLGGGGGGGV GIGPSSSTAV 180 MGPPATVPRC QVEGCHVALV NAKDYHRRHK VCEMHSKAPK VVVLGLEQRF CQQCSRFHVV 240 SEFDDSKRSC RRRLAGHNER RRKSSHHDSA SRNSAQDNKL MTGRFPYLSS PTGRALSLLS 300 SRADSWIFSS DLSSRSSAAL RELIAENRAA ILARQLILDR DWHLHHHAME DLGDAQPGSS 360 SVAVQQHPSL PEPHGWDRFH EAGAQVTLDL MQASSSAFEM LSVRGKTKEE EEECSDLWNS 420 LQGTHVV

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MENGGNMFMG NRGQTGNSSI NLAWDIRELN PTSATGFDWG GNNNNTTNGL NLYATSTATT  60
NAAAATRAET TASSCTTLPE VSTAHPLMFL PHHDNATLAH HLNQQHALYT GDGSHTHPDP  120
HLVCLKLGKR HYFEDSTALS DRHVAGGFTI GKKGKPYYNN NLGGGGGGGV GIGPSSSTAV  180
MGPPATVPRC QVEGCHVALV NAKDYHRRHK VCEMHSKAPK VVVLGLEQRF CQQCSRFHVV  240
SEFDDSKRSC RRRLAGHNER RRKSSHHDSA SRNSAQDNKL MTGRFPYLSS PTGRALSLLS  300
SRADSWIFSS DLSSRSSAAL RELIAENRAA ILARQLILDR DWHLHHHAME DLGDAQPGSS  360
SVAVQQHPSL PEPHGWDRFH EAGAQVTLDL MQASSSAFEM LSVRGKTKEE EEECSDLWNS  420
LQGTHVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	8e-37	SBP family protein