PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021280358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | LBD | ||||||||
Protein Properties | Length: 200aa MW: 21805.8 Da PI: 8.0576 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.5 | 1.5e-40 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+ael XP_021280358.1 9 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKMLLRIPAHKRVDAVVTLCYEALARVRDPVYGCVGHIFTLQQQVVNLQAEL 103 7***********************9989******************************************************************* PP DUF260 95 allkee 100 a+++++ XP_021280358.1 104 AYIQAR 109 *99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MSANNGGGPC GACKFLRRKC VKGCIFAPYF DSDQGTAHFA AVHKVFGASN ASKMLLRIPA 60 HKRVDAVVTL CYEALARVRD PVYGCVGHIF TLQQQVVNLQ AELAYIQARL STLQLLPPSQ 120 AQCPSPTSLH SSSEVGSDLV SSSNMSMSID RPQPQQASIE LTSFPNPFDQ ELENEELQAL 180 AREFVSRYLP GVRFRPSTSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-66 | LBD family protein |