PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280352.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 346aa MW: 37934.8 Da PI: 6.5726

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.6	1.3e-35	22	126	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssas 83 +g+kdrhsk++T +g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ +++ +++c+ e+ ++s XP_021280352.1 22 TGRKDRHSKVYTVKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELppwhpntntctavETDEPNACSGEMAIAEQS 116 79**************************************************************8877776666666455555663333333333 PP TCP 84 nsssg....k 89 +ss + XP_021280352.1 117 ESSGYnyqlR 126 2222223220 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGMKSVGGEI VQVQGGHIIR STGRKDRHSK VYTVKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKSAID KLAELPPWHP NTNTCTAVET DEPNACSGEM AIAEQSESSG 120 YNYQLRQFDN NPNNDSSFGA QQLGNDAIAD TLKSFFPTST TASSINFPSY PPDLISKTRI 180 PTEDLGLSLH SFQDPGLIHS HSQGDTRHTP STGQTLFAGS AQVGFETNFQ RMVAWSTNTS 240 GEDTSADFVF NSLPLAQQQA LVGQGSTFSQ RGPLQSSFLE SVRTCDDLPV ASTDHHKRQE 300 IHEASIFGSR FASDGLPRFS IRPLIHGEEE HSSVSNRPSS SPNSYC

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGMKSVGGEI VQVQGGHIIR STGRKDRHSK VYTVKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKSAID KLAELPPWHP NTNTCTAVET DEPNACSGEM AIAEQSESSG  120
YNYQLRQFDN NPNNDSSFGA QQLGNDAIAD TLKSFFPTST TASSINFPSY PPDLISKTRI  180
PTEDLGLSLH SFQDPGLIHS HSQGDTRHTP STGQTLFAGS AQVGFETNFQ RMVAWSTNTS  240
GEDTSADFVF NSLPLAQQQA LVGQGSTFSQ RGPLQSSFLE SVRTCDDLPV ASTDHHKRQE  300
IHEASIFGSR FASDGLPRFS IRPLIHGEEE HSSVSNRPSS SPNSYC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-70	TCP family protein