PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021280312.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NF-YA
Protein Properties Length: 323aa    MW: 35111.9 Da    PI: 7.7696
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021280312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.43.7e-31155211158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq Rak+e ekk   k rkpylheSRh hA+rR+Rg+gGrF
  XP_021280312.1 155 EEPVYVNAKQYHGILRRRQIRAKAELEKKA-FKVRKPYLHESRHLHAMRRARGCGGRF 211
                     69***************************9.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MPAKPVNEDQ QLDHGAQSLL QSTVFSEPWW KGVGTNPLGE AASNSSSMEQ LNGSMANGAV  60
QSQAHGGLGN GDGRNGQDHQ HPKLVRSAAS LTLGEHLEPN SQMELVGHSI VLTSYPYSNP  120
QYSGIMTSYG PQTMVSPHLY GMHHARMPLP LQMEEEPVYV NAKQYHGILR RRQIRAKAEL  180
EKKAFKVRKP YLHESRHLHA MRRARGCGGR FLNTKKLDDD VTSPTSEECM NSDANLSTKS  240
AHLSGSGCRS ANLNSFYDQK EGNGSLVQDM PKAQSLANGN TNGHCLSSTY HSSSNDAVEG  300
NYFGQQSNIV QGNVAQDGAP SIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.15e-47NF-YA family protein