PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279662.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 355aa MW: 39798.8 Da PI: 9.932

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279662.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.1	2.9e-31	290	347	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ XP_021279662.1 290 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 347 99*********************9988**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MEEVEEANKV AVESCHRVLS ILSQPQDQVH YRNLMAETGE AVFRFKRVVS LLNAGLGHAR 60 VKLRKSQTPF PQSILLDNPH HTATDYPSKN LQLGYHESSV QELSSHAKNS LYLGNPSLEL 120 SSNGKNPLQV AQQGPSGHYL YLQQQQLQQR LQLQQQQQQQ QQQQQQQQQQ QMKHQAEMMF 180 RKRNSGINLN FDSSSCTPTM SSTRSFISSL SIDGSVANLD GGSAFHIIGA PRSSDQGSQP 240 KKKCSARGED GSVKCGSSGR CHCSKKRKHR VKRSIKVPAI SSKLADIPPD DYSWRKYGQK 300 PIKGSPHPRG YYKCSSMRGC PARKHVERCL EEPSMLIVTY EGEHNHPWLP SQSTA

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MEEVEEANKV AVESCHRVLS ILSQPQDQVH YRNLMAETGE AVFRFKRVVS LLNAGLGHAR  60
VKLRKSQTPF PQSILLDNPH HTATDYPSKN LQLGYHESSV QELSSHAKNS LYLGNPSLEL  120
SSNGKNPLQV AQQGPSGHYL YLQQQQLQQR LQLQQQQQQQ QQQQQQQQQQ QMKHQAEMMF  180
RKRNSGINLN FDSSSCTPTM SSTRSFISSL SIDGSVANLD GGSAFHIIGA PRSSDQGSQP  240
KKKCSARGED GSVKCGSSGR CHCSKKRKHR VKRSIKVPAI SSKLADIPPD DYSWRKYGQK  300
PIKGSPHPRG YYKCSSMRGC PARKHVERCL EEPSMLIVTY EGEHNHPWLP SQSTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	67	ARVKLRKSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-111	WRKY family protein