PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279645.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

G2-like

Protein Properties

Length: 484aa MW: 53116.9 Da PI: 5.1508

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279645.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.8	2.8e-34	259	313	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGse+AtPk++l+ m+v+gLt++hvkSHLQkYR+ XP_021279645.1 259 KPRMRWTPELHEAFVEAVNQLGGSERATPKSVLKRMEVEGLTIYHVKSHLQKYRT 313 79****************************************************8 PP
2	Myb_DNA-binding	59.9	5.7e-19	261	312	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e +v+av+qlGg t+k++ ++m +g+t +++ks++qky+ XP_021279645.1 261 RMRWTPELHEAFVEAVNQLGGSeraTPKSVLKRMEvEGLTIYHVKSHLQKYR 312 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MEARPALSIQ RSGARPLSNL GVSGGLSSSL PALTTPLEET YQKLSDMQQV SSDRELMTRP 60 LVHATCVPTN SGAVGHIFSS SSGFSSDLHY SSASPHEKHS RNAPFISQSP TDATALPLPQ 120 SSNSVLPQSS HFNKDSSGSW CTDPGFLDFP VNTPIQSSQV ESSSCSGIMT SEDFSKRNDW 180 QEWADQLITD DEALASNWDE LLVDNNVTDL EPKMAYQVAK PCTTMPAQKP QVHQQLPSPS 240 VESRSVANPF SSANNAPAKP RMRWTPELHE AFVEAVNQLG GSERATPKSV LKRMEVEGLT 300 IYHVKSHLQK YRTARYRPES SEGSSEKQLT PIEDLSSLDL KTGMGITEAL RLQMEVQKRL 360 HEQLEIQRNL QLRIEEQGRY LQLMFEKQKS GVDKLKVSSS NNLENPPAPP DATKESPAKS 420 DLEASQMDHV NSGTDTVNAN SILESSSQEI GAKQKAPETS DLEKAETCVS ESSSQPSKRP 480 RIEE

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MEARPALSIQ RSGARPLSNL GVSGGLSSSL PALTTPLEET YQKLSDMQQV SSDRELMTRP  60
LVHATCVPTN SGAVGHIFSS SSGFSSDLHY SSASPHEKHS RNAPFISQSP TDATALPLPQ  120
SSNSVLPQSS HFNKDSSGSW CTDPGFLDFP VNTPIQSSQV ESSSCSGIMT SEDFSKRNDW  180
QEWADQLITD DEALASNWDE LLVDNNVTDL EPKMAYQVAK PCTTMPAQKP QVHQQLPSPS  240
VESRSVANPF SSANNAPAKP RMRWTPELHE AFVEAVNQLG GSERATPKSV LKRMEVEGLT  300
IYHVKSHLQK YRTARYRPES SEGSSEKQLT PIEDLSSLDL KTGMGITEAL RLQMEVQKRL  360
HEQLEIQRNL QLRIEEQGRY LQLMFEKQKS GVDKLKVSSS NNLENPPAPP DATKESPAKS  420
DLEASQMDHV NSGTDTVNAN SILESSSQEI GAKQKAPETS DLEKAETCVS ESSSQPSKRP  480
RIEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	9e-97	G2-like family protein