PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279621.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 981aa MW: 108723 Da PI: 6.4804

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.5	2.9e-41	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ k+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_021279621.1 149 VCQVEDCGADLSSSKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 226 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence
MEARFGSEAH HFYGMNPANL RAVGKRTLEW DLNDWKWDGD LFIASSINPV SADSTGRQFF 60 PLGSGNPGNS SNSSSSCSDE VNLETEKGKR ELEKKRRVIV VEDDSPNEEA GSLTLKLGGQ 120 GGHGYPISQR EGTSGKKTKL SGGSGNRAVC QVEDCGADLS SSKDYHRRHK VCEMHSKASK 180 ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTNPDTVV NGNSLNDEQT 240 SGYLLLSLLK ILSNMHSNRS DQTKDQDVLS HLLRSLANHT GEQGGRNMSG LLPQPQDSEA 300 VSALFSNGQG PPRPFKQHLT GAASEMAEKG VSSRGTRGVE VQGSTAVAVK MNNFDLNDVY 360 IDSDDGTDDI ERSPVAVNTG TSSLDCPSWI QQDSHQSSPP QTSGNSDSAS AQSPSSSSGD 420 AQSRTDRIVF KLFGKEPNDF PKVLRAQILD WLSHSPTDIE SYIRPGCIVL TIYLHQEEAA 480 WDELRCDLSF TLSRLLDCSD DTFWRSGWIY IRVQDQIAFI YNGQVVVDTS LPLRSNHYSQ 540 ITSVKPIAIS ATERVQFSVK GINLSRPATR LLCAVEGKYL LQETTNELMD GNDDYKEQDE 600 LQCVNFSCSI PTVTGRGFIE IEDHGFSSSF FPFIVAEEDV CSEIRMLESV LEISDTDADV 660 GETGKLEAKH QAMDFIHEVG WLLHRCQSKS RLGHVDPNPE PFPLRRFKWL MEFSMDREWC 720 AVVKKLLNIL LNGVVGSGEH PSLNLALTEM GLLHRAVRKN CRPLVELLLR FVPEKASDKL 780 GFENETLTGV VHKSFMFRPD VLGPAGLTPL HIAAGKDGSE DVLDALTDDP GKVGIDAWKS 840 ARDSTGSTPE DYARLRGHYS YIHLVQKKIN KRTASGHVVV DIPRALSECS MNQKQNNEST 900 SSFEIGQLEL RSMQRHCKLC DQKLAYGCGT TSRSLVYRPA MLSMVAIAAV CVCVALLFKS 960 CPEVLYVFRP FRWELLDYGT S

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence

MEARFGSEAH HFYGMNPANL RAVGKRTLEW DLNDWKWDGD LFIASSINPV SADSTGRQFF  60
PLGSGNPGNS SNSSSSCSDE VNLETEKGKR ELEKKRRVIV VEDDSPNEEA GSLTLKLGGQ  120
GGHGYPISQR EGTSGKKTKL SGGSGNRAVC QVEDCGADLS SSKDYHRRHK VCEMHSKASK  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTNPDTVV NGNSLNDEQT  240
SGYLLLSLLK ILSNMHSNRS DQTKDQDVLS HLLRSLANHT GEQGGRNMSG LLPQPQDSEA  300
VSALFSNGQG PPRPFKQHLT GAASEMAEKG VSSRGTRGVE VQGSTAVAVK MNNFDLNDVY  360
IDSDDGTDDI ERSPVAVNTG TSSLDCPSWI QQDSHQSSPP QTSGNSDSAS AQSPSSSSGD  420
AQSRTDRIVF KLFGKEPNDF PKVLRAQILD WLSHSPTDIE SYIRPGCIVL TIYLHQEEAA  480
WDELRCDLSF TLSRLLDCSD DTFWRSGWIY IRVQDQIAFI YNGQVVVDTS LPLRSNHYSQ  540
ITSVKPIAIS ATERVQFSVK GINLSRPATR LLCAVEGKYL LQETTNELMD GNDDYKEQDE  600
LQCVNFSCSI PTVTGRGFIE IEDHGFSSSF FPFIVAEEDV CSEIRMLESV LEISDTDADV  660
GETGKLEAKH QAMDFIHEVG WLLHRCQSKS RLGHVDPNPE PFPLRRFKWL MEFSMDREWC  720
AVVKKLLNIL LNGVVGSGEH PSLNLALTEM GLLHRAVRKN CRPLVELLLR FVPEKASDKL  780
GFENETLTGV VHKSFMFRPD VLGPAGLTPL HIAAGKDGSE DVLDALTDDP GKVGIDAWKS  840
ARDSTGSTPE DYARLRGHYS YIHLVQKKIN KRTASGHVVV DIPRALSECS MNQKQNNEST  900
SSFEIGQLEL RSMQRHCKLC DQKLAYGCGT TSRSLVYRPA MLSMVAIAAV CVCVALLFKS  960
CPEVLYVFRP FRWELLDYGT S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein