PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279343.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 329aa MW: 35653.8 Da PI: 8.8618

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	104.2	2.2e-32	168	236	5	66
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......s 66 ++++++h+kv+gRdRR+Rl+ caar+F+L++eLG+++d++ti WLl+qa+p+i+++tgt + XP_021279343.1 168 SKTTKDRHAKVDGRDRRIRLPPVCAARIFQLTRELGYKTDGETIAWLLRQAEPSIIAATGTgisspgsT 236 6799*********************************************************55444441 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MAAGGCCIRL PPHFHLCFFA KKFCVSSCLQ QNGCLRTLAQ MSSSXAATVP CRPLSLPPGF 60 HKRMEQESCM GKRRERKDSL RVEEGLLYAI KTGISGANQA RVCSNTTQTM GTSPPIIHLQ 120 VDFSSLCDIL MASENIGLEM ALPNPSTRKP RPFSQKKPSG LKSKLVTSKT TKDRHAKVDG 180 RDRRIRLPPV CAARIFQLTR ELGYKTDGET IAWLLRQAEP SIIAATGTGI SSPGSTTPPA 240 LSTPTTGLAP FSSGPLLFSS DCSPSLTFCE PKVVSENQDM VKRSVVSRAE PALPPFEFDL 300 VTNFDLEFSA NEIAMLQSVT GTHGTEGKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-24	TCP family protein