PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279163.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 807aa    MW: 89100.4 Da    PI: 6.7394
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.7e-24166267199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++p++ ae++      ++++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++
  XP_021279163.1 166 FCKTLTASDTSTHGGFSVPRRAAEDCfppldYKQTRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVAGDAVLFL--RGEGG 258
                     99****************************8444556789************************************************..4499* PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     el+++++r+
  XP_021279163.1 259 ELRLGIRRA 267
                     ******996 PP
2Auxin_resp124.47.7e-41292373182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+stks+F+v+Y+Pras++eFvv+++k+ k+++++v+ G+Rfkm+fe++ds+err+sG+v+g+ d+dp+rWpnSkWr+L
  XP_021279163.1 292 VANAISTKSMFHVFYSPRASHAEFVVPFQKYIKSITNPVCTGTRFKMRFEMDDSPERRCSGVVTGIGDSDPYRWPNSKWRCL 373
                     689******************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    
MEIDLNHAVN EVEKTALCNG DCDKSSACVY CLSSSSSSCS SNSASPPGAS SIYLELWRAC  60
AGPLTSLPKK GNVVVYFPQG HLEQVASASP FSPLEMATFD LPPQIFCKVV NVQLLANKEN  120
DEVYTQVTLL PQPELGGPNL ESKQLDELGV DEGGGGSPTK STPHMFCKTL TASDTSTHGG  180
FSVPRRAAED CFPPLDYKQT RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTTGWSIFVS  240
QKNLVAGDAV LFLRGEGGEL RLGIRRAVRP RNGLPDSVIA KQNSYPNVLS SVANAISTKS  300
MFHVFYSPRA SHAEFVVPFQ KYIKSITNPV CTGTRFKMRF EMDDSPERRC SGVVTGIGDS  360
DPYRWPNSKW RCLMVRWDED IVSDHQERVS PWEIDPSVSL PPLSIQSSPR LKKLRTGLQA  420
APPDTPITGG GGYLDFEESV RSSKVLQGQE NVGFVSPLYE RDTVNRPLDF EMQSPAHQSL  480
VSTGIEKTNI SEFLRARTTT YTGFAESNVF PKVLQGQEIC PLRSLTQKAD LNLGIWAKTN  540
LGCNSFNMHQ APKTNCYPLA SEGLRNMYFP YSDFYKAGQD PTMSSYTSTF LRGNVSFNPS  600
SVKTGIIVDS VRKPNPLNEH KPLESIASPA FRKSLRNQQD DCFKGNVAGC KLFGFSLTAE  660
SPTPNSQNSG KRSCTKVHKQ GSLVGRAIDL SRLNGYEDLM TELEHLFSME GLLRDADKGW  720
RVLYTDSEND VMVVGDDPWH EFCDVVSKIH IYTQEEVEKM TIGMASDDTQ SCLEQAPVIM  780
EASKSSSVGQ PDSSPTVXKG MRIGVCF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein