PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279138.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 222aa    MW: 23882.3 Da    PI: 8.7149
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.15.5e-42401391100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA+ r+rdPvyG++g i +lqqq+++l+ael+
  XP_021279138.1  40 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAIVTLQQQMQTLQAELN 134
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_021279138.1 135 AVRAE 139
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MSRDRERFDE MGKKIKTDAS SQMGRRHLLG PPGALNTITP CAACKLLRRR CAEECPFSPY  60
FSPHEPQKFA AVHKVFGASN VSKMLMEVPE SQRADAANSL VYEANLRLRD PVYGCMGAIV  120
TLQQQMQTLQ AELNAVRAEI LKYKFREAST SNIIPSSHAA LISSGAVSIA APPSPLPPIP  180
PPPPPSIVVS SASSSSTSSL YTPPTSAAGY SSISSDNVPY FD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.14e-83LBD family protein