PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279081.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 663aa    MW: 74918.2 Da    PI: 5.7959
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.23.8e-1112886581374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cAeav s+d+++a+ +L ++++++sp g++ qR a++f++AL+arla+++se y+al +++ +    s ++ a kl+  ++P++k+s+
  XP_021279081.1 288 LRTLLIQCAEAVGSNDFRNANDFLMQIRNHSSPFGNASQRKAHHFAKALEARLAGTGSEEYAALVSKRIP----SASIEACKLLISACPFMKVSN 378
                     6789***********************************************************9999997....789999*************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + + ++I++ +++ +r+Hii f++ +Gl W +L+q L++Rp++pp+lRiTg++ p++g  s+ ++ee+g+ La+ ++++++pfe+n  +++++e+
  XP_021279081.1 379 FFTTEMIMKLAKKPTRIHIIHFGVPYGLEWSSLIQRLSTRPGNPPRLRITGIDLPQPGveSAGRVEEIGHFLANCCKQFNIPFEYNG-ITQKWES 472
                     *********************************************************9999**************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L++ ++E+++Vn+ ++l +l+de ++l+s+rd+vL+lv++++P+++++   +  +n++ F+ rf eal+y+s++fd+le+ +p+ ++er+
  XP_021279081.1 473 IQLEDLKIAKDEVVVVNCLYRLRHLVDEMADLSSPRDTVLNLVRKINPNIFIHGIVNGAYNAPFFVSRFREALYYFSTMFDMLEEIAPSGDQERM 567
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++E+ + g+ei nvvaceg+er+er et+++W+ r  +aG++++pl++++ ++ak+ ++ ++ + + v+e+++++++gWk+r L+++S+Wr
  XP_021279081.1 568 VLEKNIYGKEILNVVACEGSERIERPETYKQWQVRNLRAGLRQLPLKQEILNSAKAHVKLHYHKDFLVDEDKNWMLQGWKGRILYALSFWR 658
                     **************************************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    
MNPSSYSTVG DPADESNFPN ACYIMTPIFT EDANVKTFAL QDSTFGEAES SFADILDEKY  60
PVSTTLPFPI CSDLDCITAA NNLVQSDFIC DLARFEFSSM LSPQVEHAFQ DYPQPVSQSF  120
FPDSSFGEAV DVPVIYPVNK SLVPDLVNRD LCCESLSDAQ FLEGGVKETQ KLIAYGDHMS  180
AEEESPVATE RETSEEMDHL FCETRKVETR LQICGAGEIG REHGRVVCPE QFEQPDMFKN  240
DVSAAAAADI AWRNEARRIM NACGEPKRNS AGTKKRRRSV NKRNLVDLRT LLIQCAEAVG  300
SNDFRNANDF LMQIRNHSSP FGNASQRKAH HFAKALEARL AGTGSEEYAA LVSKRIPSAS  360
IEACKLLISA CPFMKVSNFF TTEMIMKLAK KPTRIHIIHF GVPYGLEWSS LIQRLSTRPG  420
NPPRLRITGI DLPQPGVESA GRVEEIGHFL ANCCKQFNIP FEYNGITQKW ESIQLEDLKI  480
AKDEVVVVNC LYRLRHLVDE MADLSSPRDT VLNLVRKINP NIFIHGIVNG AYNAPFFVSR  540
FREALYYFST MFDMLEEIAP SGDQERMVLE KNIYGKEILN VVACEGSERI ERPETYKQWQ  600
VRNLRAGLRQ LPLKQEILNS AKAHVKLHYH KDFLVDEDKN WMLQGWKGRI LYALSFWRPS  660
KEP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-152GRAS family protein