PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021278578.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 690aa MW: 78294.2 Da PI: 5.9845 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 349 | 7.8e-107 | 317 | 686 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL +cA+ v+ d+++a++lL +++ ++sp gd ++Rla+yf+++L+ rl +++ ly +p++ t s+ l+a+ l++ ++P+ ++s+l XP_021278578.1 317 SLLSQCAQDVAIYDQRAATELLGKIRRHSSPFGDGTERLAHYFANGLEVRLKGTGAPLYTPIPSNGTL---ASDILKAYILYVSACPFRRISNLF 408 799********************************************************888887776...9*********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN+ I + +e++++vH iDf+is+G+QWp+L+q L++R++gpp+lRi g++ p++g +e++e+tg+rL++ +e+++vpfe+n+ +akr+e ++ XP_021278578.1 409 ANRNIAKLAEKATTVHLIDFGISYGFQWPCLIQRLSTRRGGPPKLRISGIDFPQPGfrPAERIEATGRRLRRCCENVDVPFEYNA-IAKRWEFVR 502 *******************************************************9*****************************.7******** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +e+L+++++E ++Vn++++l +l+d+sv l+s+r+ vLkl+k+++P+++++ + ++n + F++rf ea+ ++sa+fd+lea++pre+ +r + XP_021278578.1 503 VEDLKIERDELIVVNCMYRLRNLPDDSVVLNSPRNIVLKLIKRINPDLFIHGVVNGSYNVPFFVTRFREAFFHFSAIFDMLEANVPREDPDRLLL 597 *********************************************************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 Ere++gr+++nv+a eg er+ r et+++W+ r ++aGF++++l++k + a+++++ + + + +e + +++++gWk+r + ++S+W+ XP_021278578.1 598 EREMFGRDVMNVIAYEGLERIDRPETYKQWQFRNQKAGFRQLRLDQKLLNRARAVMKSNYHEDFAIEVDGQWILQGWKGRVIHALSCWK 686 ************************************************************999*************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 690 aa Download sequence |
MDTLLQNNGS EVVILNQNPV DGSNPSNILV DPAKSNHPGH VASSVGSNSS DGDSPYGGDN 60 LDFSDAVLKF INDVLMEEDV EGRPCMLQDC LALQAAEKSF YDVLVQKYPP LPDHFHQDID 120 VDNVCPYDPV ICSNRADGND SQAAANNMVE SSWNYHQHGL DSPLMQSSSN YTTELSSYLP 180 RLCGEILPSE SVESNTFKLP ELQKGVEDRE AEKEVWKHIS HGSMGRKNHP REFEDSLEET 240 RNNKQFALIT EEDSSEEHVF DEVFLVKGGN VSCPLYEASQ NRANRTLQDS GQVKGDSSRK 300 SRAKKQGNGK EMVDLWSLLS QCAQDVAIYD QRAATELLGK IRRHSSPFGD GTERLAHYFA 360 NGLEVRLKGT GAPLYTPIPS NGTLASDILK AYILYVSACP FRRISNLFAN RNIAKLAEKA 420 TTVHLIDFGI SYGFQWPCLI QRLSTRRGGP PKLRISGIDF PQPGFRPAER IEATGRRLRR 480 CCENVDVPFE YNAIAKRWEF VRVEDLKIER DELIVVNCMY RLRNLPDDSV VLNSPRNIVL 540 KLIKRINPDL FIHGVVNGSY NVPFFVTRFR EAFFHFSAIF DMLEANVPRE DPDRLLLERE 600 MFGRDVMNVI AYEGLERIDR PETYKQWQFR NQKAGFRQLR LDQKLLNRAR AVMKSNYHED 660 FAIEVDGQWI LQGWKGRVIH ALSCWKPVQE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |