PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278475.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 344aa MW: 38555.1 Da PI: 7.1334

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	8e-05	183	202	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_021278475.1 183 FSCPLCFKTFNRYNNMQMHM 202 89*****************9 PP
2	zf-C2H2	15.6	4.6e-05	267	289	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ XP_021278475.1 267 FMCRKCGKTFAVRGDWRTHEKNC 289 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MSDSDPCSDY FNGWFNPNPF NHFFPSTTTS NPSSYAPNYG YNIYSNIIHG NSFTQYNSQA 60 SPPSPPLKEA LPLLSLSPTR HEDQELSCSA MEVEKNKGKE ESCCFSSTAD DETITVALHL 120 GLPSPTSADL ISRVSVAADE VSAALAADKV DVTVASEHQL NTVNKGQYWI PTPAQILIGP 180 TQFSCPLCFK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAPGCRNNI 240 DHPRSKPLKD FRTLQTHYKR KHGIKPFMCR KCGKTFAVRG DWRTHEKNCG KLWYCTCGSD 300 FKHKRSLKDH IRAFGNGHAP YGIDSFDEED EPASEIEQDN ESSQ

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MSDSDPCSDY FNGWFNPNPF NHFFPSTTTS NPSSYAPNYG YNIYSNIIHG NSFTQYNSQA  60
SPPSPPLKEA LPLLSLSPTR HEDQELSCSA MEVEKNKGKE ESCCFSSTAD DETITVALHL  120
GLPSPTSADL ISRVSVAADE VSAALAADKV DVTVASEHQL NTVNKGQYWI PTPAQILIGP  180
TQFSCPLCFK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAPGCRNNI  240
DHPRSKPLKD FRTLQTHYKR KHGIKPFMCR KCGKTFAVRG DWRTHEKNCG KLWYCTCGSD  300
FKHKRSLKDH IRAFGNGHAP YGIDSFDEED EPASEIEQDN ESSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-133	C2H2 family protein