PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021278455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | SRS | ||||||||
Protein Properties | Length: 358aa MW: 36824.6 Da PI: 8.3471 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 223.5 | 4.3e-69 | 137 | 296 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 s +a+CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrer+ + aaa++ a +s +++ +k++r +++++++s+t++s+++++ XP_021278455.1 137 SSGATCQDCGNQAKKDCTHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERMLMVAAATAGAGSSGSTSGAKKPRLI-TSQTTTTSHTSTSNTTPP 230 56789*********************************************************999********986.88899999********** PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e XP_021278455.1 231 RSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVE 296 *****999********************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence |
MGMVGLRDVF VVAPASSFNH HHHHHHHHTQ DPIMANDQIN GQNASTALGV GVGVGVIPLL 60 TATPCLAPQN MEDSDLLSNN GRNKLSGMQL WQNQNSSSHY LKKPSSVPDN NNSSSMNLIQ 120 SSGGGGMGGG SGGSGSSSGA TCQDCGNQAK KDCTHRRCRT CCKSRGFDCP THVKSTWVPA 180 ARRRERMLMV AAATAGAGSS GSTSGAKKPR LITSQTTTTS HTSTSNTTPP RSFDTSSSHQ 240 DAGFKESLPG QVRAPAVFKC VRVTAVEDGE DEYAYQAVVK IGGHVFKGFL YDQGVEGREG 300 FPNISELHLG GGGGAGGGGG GSGRNGGSSS SPVLDPSEVY AATGGGLLAG SSYGNPIN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.1 | 3e-76 | SRS family protein |