PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278312.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 274aa    MW: 29278.7 Da    PI: 4.6694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05248271123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C+ksF +   L++H +  H
  XP_021278312.1 248 FSCGSCNKSFGSEGGLESHKKAkH 271
                     89*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MEFWGIEVKA GKPIKADPGA NHVIHLSQAT LGESKNKAES VTLHVNADGQ KLVLGTLSHQ  60
NFPQLSFDLV FDQEFELSHN CKHGSVYFLG YKTFVPEEGT DDEFDMSSDE ESSEDEELPV  120
AAAENGKAKT DVKPSKVNAG KPDALKQAVK IEEPSNNKKT EDDDESDSED ESGSDEEDDS  180
EDEDESDEVE ASKKRPAEAA TPVSAKKAKS AATPQKTDDK KGGHTATPHP SKQAGKSSAK  240
SPKSGGQFSC GSCNKSFGSE GGLESHKKAK HGGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-36C2H2 family protein