PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278290.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 829aa    MW: 92446.8 Da    PI: 5.9963
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278290.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.92.9e-1194568261373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+a+ss+d   a++lL++++++asp gd  qRla++f+ AL arla++++++y +l++++ s    +e l+a++++  ++P++k++ 
  XP_021278290.1 456 LRTLLILCAQAISSDDSGTAKELLKQIRQHASPFGDGSQRLAHCFADALDARLAGTGTQIYTSLAANRIS---AAEMLKAYQVYISACPFMKMAI 547
                     5789**********************************************************99999998...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN  Il+ +e+++++HiiDf+i +G+QWpaL++ La+Rp+gpp+lRiTg++ p+ g   +e ++etg+rLa+++e+ +vpfe+n+ +a+++e+
  XP_021278290.1 548 IFANINILKVAEKATTLHIIDFGIFYGFQWPALIHHLANRPGGPPKLRITGIEFPRRGfrPAEGVQETGHRLARYCERYHVPFEYNA-IAQKWET 641
                     ********************************************************9999***************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E++aVn+ ++  +llde+v+l+s+rd+vL+l+++++P+++v++  + ++n++ F++rf eal ++salfd+ e+++pr++  r 
  XP_021278290.1 642 IRTEDLKIDSNEVIAVNCLIRFRNLLDETVALNSPRDTVLNLIRKINPDIFVHSIVNGSYNAPFFVTRFREALFHFSALFDMCETNVPRDNPMRL 736
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++E+++ grei+n+vaceg+er+er e++++W+ r ++aGF+++pl+ +++k+++  l+ ++   ++v+ +  ++++gWk+r +++ SaW
  XP_021278290.1 737 MLEQKFYGREIMNIVACEGTERVERPESYKQWQVRNMRAGFRQLPLDPEIMKKVREKLKACYHSDFMVDVDGRWMLQGWKGRIIYASSAW 826
                     **************************************************************777************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    
MEDFDPDHQV QPCKTMSHDV DFGGEGNSAI GGYDIHDTPP SDNTKLRTDQ SQSGKRRAPN  60
AKVVAGAFNG FPNSVNGSNF DNGFILPNSN GYPKFEISNG VKPIDVDFSS LGAPFLPSLG  120
LGNSSASTSL LTMEKEGDSS SPSDDSDFSD TVLKYISQVL LEEDMDEKPC MFHDSLALQA  180
AEKSLYEVLG ESYPRSNQAP LCSDLSVESP DDCSFGTYSD HSTFSGSSYC TSNSIDSRWS  240
GDFWEKNNKP SFLQISIPEN FVFQSTVNSG SQPSGRLQND NVKNGNALVG SSVSELAIPN  300
CFGESELALH FKRGVEEASK FLPKGNQLTI DFDSNAWTSE LKQKAPRTVV KAERDEEYSP  360
PRLTGKKNHE REDEDLEEGR NNKQSAVFGD ESELSDMFDK VLICAGRRGQ SSTCDADKIL  420
QNAPRKMLQQ NDQTNGSGSG KARSKKQGKK KEVVDLRTLL ILCAQAISSD DSGTAKELLK  480
QIRQHASPFG DGSQRLAHCF ADALDARLAG TGTQIYTSLA ANRISAAEML KAYQVYISAC  540
PFMKMAIIFA NINILKVAEK ATTLHIIDFG IFYGFQWPAL IHHLANRPGG PPKLRITGIE  600
FPRRGFRPAE GVQETGHRLA RYCERYHVPF EYNAIAQKWE TIRTEDLKID SNEVIAVNCL  660
IRFRNLLDET VALNSPRDTV LNLIRKINPD IFVHSIVNGS YNAPFFVTRF REALFHFSAL  720
FDMCETNVPR DNPMRLMLEQ KFYGREIMNI VACEGTERVE RPESYKQWQV RNMRAGFRQL  780
PLDPEIMKKV REKLKACYHS DFMVDVDGRW MLQGWKGRII YASSAWISA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein