PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278262.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 317aa MW: 33352.3 Da PI: 6.8546

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278262.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H XP_021278262.1 134 YECKTCNRSFPSFQALGGHRASH 156 99**********99999998887 PP
2	zf-C2H2	13.2	0.00027	209	231	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_021278262.1 209 HECSICGSEFTSGQALGGHMRRH 231 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MQAQEEFVGS NDQALIIKGK RTKRQRSASP FGVTVTSSSS SACGGGNSGG XGAAAGGGGG 60 GVVEEYNSIS SPTTSSEIYE STEEEEDMAN CLIMLAQSDG PKRDVGEKFK IEKFGTRKFS 120 EIATTTNKAG FYVYECKTCN RSFPSFQALG GHRASHKKPK GXTAEEKKPL VLAVKGDVEE 180 GQFNRESPVL ALQVSNNNKA CHGNKGKIHE CSICGSEFTS GQALGGHMRR HRAAAAAAAA 240 AAAAAASNPV GMTMSADTTS TTIDSSNGDD IKPRNILSLD LNLPAPEDDL RDSKFQFGXV 300 PQQAIVFSTP ALVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-63	C2H2 family protein